Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24]
37,212 sequences; 641,356,059 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq36 556 4e-154
seq16 556 4e-154
seq18 468 1e-127
>seq36
Length=171746
Score = 556 bits (616), Expect = 4e-154
Identities = 722/995 (73%), Gaps = 2/995 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 55631 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 55690
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 55691 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 55750
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 55751 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 55810
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 55811 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 55870
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || ||||||||||||||||| | || |||||||| ||||||||||| ||||
Sbjct 55871 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 55930
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 55931 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 55990
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 55991 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGC 56050
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 56051 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 56110
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 56111 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 56170
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| |
Sbjct 56171 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 56230
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || |||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 56231 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 56290
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||| ||||
Sbjct 56291 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 56350
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239
|||| ||||||||||||| | ||||||||||| || ||||| || || | || || |
Sbjct 56351 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 56410
Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299
| | | |||| | ||| || || || || ||||| || || | || || ||||
Sbjct 56411 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 56470
Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359
|| ||||| || || ||||| || || || || || || ||| || ||||||||||
Sbjct 56471 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 56530
Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| || || |||| ||| ||| | || ||||| | || ||||||||||| | |||
Sbjct 56531 AAACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCGAACCATCCAATGTAA 56589
Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|||||||| | ||| ||| | |||| ||| ||
Sbjct 56590 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 56624
>seq16
Length=29110212
Score = 556 bits (616), Expect = 4e-154
Identities = 722/995 (73%), Gaps = 2/995 (0%)
Strand=Plus/Minus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 16536123 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 16536064
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 16536063 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 16536004
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 16536003 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 16535944
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 16535943 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 16535884
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || ||||||||||||||||| | || |||||||| ||||||||||| ||||
Sbjct 16535883 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 16535824
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 16535823 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 16535764
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 16535763 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGC 16535704
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 16535703 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 16535644
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 16535643 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 16535584
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| |
Sbjct 16535583 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 16535524
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || |||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 16535523 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 16535464
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||| ||||
Sbjct 16535463 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 16535404
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239
|||| ||||||||||||| | ||||||||||| || ||||| || || | || || |
Sbjct 16535403 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAG 16535344
Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299
| | | |||| | ||| || || || || ||||| || || | || || ||||
Sbjct 16535343 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 16535284
Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359
|| ||||| || || ||||| || || || || || || ||| || ||||||||||
Sbjct 16535283 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 16535224
Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| || || |||| ||| ||| | ||| |||| | || ||||||||||| | |||
Sbjct 16535223 AAACAGAAGTTGCGGTCAATAAGGTAGGGA-TCATCAAAACACCGAACCATCCAATGTAA 16535165
Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|||||||| | ||| ||| | |||| ||| ||
Sbjct 16535164 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 16535130
>seq18
Length=20869551
Score = 468 bits (518), Expect = 1e-127
Identities = 555/752 (74%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 2056784 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 2056843
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 2056844 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 2056903
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 2056904 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 2056963
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 2056964 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 2057023
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || ||||||||||||||||| | || |||||||| ||||||||||| ||||
Sbjct 2057024 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 2057083
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 2057084 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 2057143
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 2057144 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGC 2057203
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 2057204 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 2057263
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 2057264 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 2057323
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||| | || |||||||| |
Sbjct 2057324 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAACTGCAACAGGAGCTG 2057383
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || ||||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 2057384 AATATGCAACAACAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 2057443
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||| ||||
Sbjct 2057444 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 2057503
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCC 22211
||| ||||||||||||| | |||||||||
Sbjct 2057504 TGTGTAGCCATTCATCAACGGATGCAGCTTCC 2057535
Score = 260 bits (288), Expect = 4e-65
Identities = 260/337 (77%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 2056139 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 2056198
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 2056199 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 2056258
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 2056259 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 2056318
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 2056319 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 2056378
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || ||||||||||||||||| | || |||||||| ||||||||||| ||||
Sbjct 2056379 AATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 2056438
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
| |||||||| ||||| ||||| || || |||||||
Sbjct 2056439 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACC 2056475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146143391781360
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