Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq36 511 6e-140 seq16 511 6e-140 seq18 392 4e-104 >seq36 Length=171746 Score = 511 bits (566), Expect = 6e-140 Identities = 710/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 55629 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 55688 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 55689 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 55746 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 55747 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 55806 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 55807 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 55866 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 55867 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 55925 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 55926 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 55985 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 55986 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 56045 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 56046 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 56105 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 56106 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 56165 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || |||||||||| |||||| | ||||| || || ||||| | || || Sbjct 56166 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 56225 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 56226 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 56285 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 56286 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 56345 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || || || || || Sbjct 56346 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 56405 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 56406 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 56465 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 56466 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 56525 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| || || || | || ||| ||| ||||| | ||| || ||||| || | Sbjct 56526 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAAT 56585 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 56586 GTAAAGACGGTTTTCAGTGCTGGTTATCCA 56615 >seq16 Length=29110212 Score = 511 bits (566), Expect = 6e-140 Identities = 710/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 16536125 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 16536066 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 16536065 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 16536008 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 16536007 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 16535948 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 16535947 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 16535888 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 16535887 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 16535829 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 16535828 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 16535769 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 16535768 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 16535709 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 16535708 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 16535649 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 16535648 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 16535589 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || |||||||||| |||||| | ||||| || || ||||| | || || Sbjct 16535588 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 16535529 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 16535528 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 16535469 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 16535468 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 16535409 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || || || || || Sbjct 16535408 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 16535349 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 16535348 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 16535289 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 16535288 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 16535229 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| || || || | || ||| ||| ||||| | ||| || ||||| || | Sbjct 16535228 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAAT 16535169 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 16535168 GTAAAGACGGTTTTCAGTGCTGGTTATCCA 16535139 >seq18 Length=20869551 Score = 392 bits (434), Expect = 4e-104 Identities = 544/757 (72%), Gaps = 6/757 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2056782 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 2056841 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 2056842 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 2056899 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 2056900 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 2056959 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 2056960 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 2057019 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 2057020 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 2057078 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 2057079 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 2057138 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 2057139 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 2057198 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 2057199 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 2057258 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 2057259 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 2057318 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || |||||||||| |||||| | ||||| || || ||| | | || || Sbjct 2057319 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAACTGCAACAGG 2057378 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 2057379 AGCTGAATATGCAACAACAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 2057438 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 2057439 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 2057498 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCC 8631 ||||| | | ||| ||||| | | ||||||||| Sbjct 2057499 ACCGTTGTGTAGCCATTCATCAACGGATGCAGCTTCC 2057535 Score = 205 bits (226), Expect = 1e-47 Identities = 275/378 (73%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2056137 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 2056196 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 2056197 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 2056254 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 2056255 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 2056314 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 2056315 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 2056374 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 2056375 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 2056433 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 2056434 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 2056493 Query 8235 TTCAGTTGTCTCTCTGAT 8252 ||| || || || ||||| Sbjct 2056494 TTCTGTGGTTTCCCTGAT 2056511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615575931604640