Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq36 576 4e-160 seq16 576 4e-160 seq18 421 2e-113 >seq36 Length=171746 Score = 576 bits (638), Expect = 4e-160 Identities = 734/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| ||||| Sbjct 56633 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTC 56574 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || | ||||||| |||| ||||| Sbjct 56573 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 56515 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 56514 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 56455 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 56454 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 56395 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || ||||||||||||| || |||| |||||||| ||||| || || |||||| | Sbjct 56394 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 56335 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 56334 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 56275 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 56274 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 56215 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 |||||||| || ||| | |||||||| |||| || || |||||| ||||| ||||| Sbjct 56214 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 56155 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 56154 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 56095 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 56094 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 56035 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 56034 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 55975 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||| ||||| || || ||||| |||||||| || || || || Sbjct 55974 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 55915 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 55914 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 55856 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | ||||||| Sbjct 55855 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 55796 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 55795 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 55736 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 55735 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 55676 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 55675 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 55631 >seq16 Length=29110212 Score = 576 bits (638), Expect = 4e-160 Identities = 734/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| ||||| Sbjct 16535121 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTC 16535180 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || | ||||||| |||| ||||| Sbjct 16535181 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 16535239 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 16535240 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 16535299 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 16535300 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 16535359 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || ||||||||||||| || |||| |||||||| ||||| || || |||||| | Sbjct 16535360 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 16535419 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 16535420 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 16535479 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 16535480 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 16535539 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 |||||||| || ||| | |||||||| |||| || || |||||| ||||| ||||| Sbjct 16535540 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 16535599 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 16535600 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 16535659 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 16535660 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 16535719 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 16535720 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 16535779 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||| ||||| || || ||||| |||||||| || || || || Sbjct 16535780 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 16535839 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 16535840 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 16535898 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | ||||||| Sbjct 16535899 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 16535958 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 16535959 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 16536018 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 16536019 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 16536078 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 16536079 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 16536123 >seq18 Length=20869551 Score = 421 bits (466), Expect = 2e-113 Identities = 540/742 (73%), Gaps = 2/742 (0%) Strand=Plus/Minus Query 42542 CCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTA 42601 || |||| |||||||| |||| || || |||||| | || | || | ||||| | Sbjct 2057524 CCGTTGATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTAC 2057465 Query 42602 TCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGC 42661 | ||| | | ||| |||| || || ||||||||| | ||| || || ||| | | Sbjct 2057464 TTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTC 2057405 Query 42662 CCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCT 42721 | ||||| ||||||| || || || ||||| || | |||||||| || ||| | ||| Sbjct 2057404 CTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGCTGTTTTCTTGATCT 2057345 Query 42722 ATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCA 42781 ||||| |||| || || |||||| ||||| |||||||| || || || ||||| |||| Sbjct 2057344 ATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 2057285 Query 42782 ACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTG 42841 |||| ||| | || ||||||||||| || |||||||||||||| || || || ||| | | Sbjct 2057284 ACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAG 2057225 Query 42842 GTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCT 42901 |||| || || ||||| || || || | || |||||||||||| | || || | Sbjct 2057224 GTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTT 2057165 Query 42902 CTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTC 42961 || | | | | ||||| || ||||| ||| ||| | || |||| ||||| | Sbjct 2057164 CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGC 2057105 Query 42962 AAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCC 43021 |||| || || ||||| |||||||| || || || ||||| ||||| || | ||||||| Sbjct 2057104 AAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCC 2057045 Query 43022 AATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTT 43080 ||||||| | |||| || ||| ||| ||||| || ||||| | || |||||||| || Sbjct 2057044 AATATGC-TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTA 2056986 Query 43081 GTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTT 43140 || || |||||||| ||| || | || | ||||||||||| || ||| | |||||||| Sbjct 2056985 GTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTC 2056926 Query 43141 AACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATT 43200 || || ||||||||| | ||||||| ||| | ||| || |||||||||||||||| Sbjct 2056925 AATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATT 2056866 Query 43201 TTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCG 43260 | || ||||| |||||||| | || || ||||| || || ||||| || |||||||| Sbjct 2056865 ATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCT 2056806 Query 43261 CTTGATCTTGCATCCGTGGAGG 43282 || || || || | || |||| Sbjct 2056805 CTAGACCTAGCTGCTGTTGAGG 2056784 Score = 237 bits (262), Expect = 5e-58 Identities = 275/368 (75%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 42916 GAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT 42975 ||||| || ||||| ||| ||| | || |||| ||||| ||||| || || ||| Sbjct 2056505 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACT 2056446 Query 42976 TATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT 43035 || |||||||| || || || ||||| ||||| || | |||||||||||||| | |||| Sbjct 2056445 TACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTT 2056387 Query 43036 -AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTT 43094 || ||| ||| ||||| || ||||| | || |||||||| || || || |||||||| Sbjct 2056386 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 2056327 Query 43095 CACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATC 43154 ||| || | || | ||||||||||| || ||| | |||||||| || || |||||||| Sbjct 2056326 TACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 2056267 Query 43155 ACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAA 43214 | | ||||||| ||| | ||| || |||||||||||||||| | || ||||| || Sbjct 2056266 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 2056207 Query 43215 CCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATC 43274 |||||| | || || ||||| || || ||||| || |||||||| || || || || | Sbjct 2056206 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 2056147 Query 43275 CGTGGAGG 43282 || |||| Sbjct 2056146 TGTTGAGG 2056139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143469373932176