Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq36 569 2e-157 seq16 569 2e-157 seq18 443 2e-119 >seq36 Length=171746 Score = 569 bits (630), Expect = 2e-157 Identities = 714/977 (73%), Gaps = 12/977 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || |||||||||||| | ||||||||| | | | | | Sbjct 56602 CTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCG 56543 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 56542 CAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 56483 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 56482 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTC 56423 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || |||||| | || || || || || |||||||| ||| | |||||| Sbjct 56422 CTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATG 56363 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 56362 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 56305 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || |||||| || ||||||||||||| Sbjct 56304 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 56246 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | ||||||||| || || || || | |||||| ||||| ||| | | ||||| Sbjct 56245 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAA 56186 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | ||||| || ||| ||||||| |||||||| || |||||||||||||| |||| || Sbjct 56185 TTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 56126 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 56125 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 56066 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 56065 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 56006 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 56005 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAG 55946 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| |||||||| || || || || || | |||||||| |||| Sbjct 55945 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 55886 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | |||||||| || | | | || |||||| | || || ||||| || || | | Sbjct 55885 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 55826 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||| Sbjct 55825 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 55766 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| || ||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 55765 ACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 55709 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| | Sbjct 55708 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 55649 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| ||||||| |||| Sbjct 55648 ACCTAGCTGCTGTTGAG 55632 >seq16 Length=29110212 Score = 569 bits (630), Expect = 2e-157 Identities = 714/977 (73%), Gaps = 12/977 (1%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || |||||||||||| | ||||||||| | | | | | Sbjct 16535152 CTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCG 16535211 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 16535212 CAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 16535271 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || || ||||| || | | Sbjct 16535272 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTC 16535331 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || |||||| | || || || || || |||||||| ||| | |||||| Sbjct 16535332 CTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATG 16535391 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 16535392 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 16535449 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || |||||| || ||||||||||||| Sbjct 16535450 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 16535508 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | ||||||||| || || || || | |||||| ||||| ||| | | ||||| Sbjct 16535509 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAA 16535568 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | ||||| || ||| ||||||| |||||||| || |||||||||||||| |||| || Sbjct 16535569 TTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 16535628 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 16535629 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 16535688 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 16535689 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 16535748 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 16535749 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAG 16535808 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| |||||||| || || || || || | |||||||| |||| Sbjct 16535809 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 16535868 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | |||||||| || | | | || |||||| | || || ||||| || || | | Sbjct 16535869 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 16535928 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||| Sbjct 16535929 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 16535988 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| || ||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 16535989 ACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 16536045 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| | Sbjct 16536046 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 16536105 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| ||||||| |||| Sbjct 16536106 ACCTAGCTGCTGTTGAG 16536122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 155897 TTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 ||||||||||||| ||||| || ||||| ||||||||||||||||| ||||| ||||||| Sbjct 26298428 TTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 26298487 Query 155957 CTG 155959 || Sbjct 26298488 TTG 26298490 >seq18 Length=20869551 Score = 443 bits (490), Expect = 2e-119 Identities = 554/757 (73%), Gaps = 12/757 (2%) Strand=Plus/Minus Query 155211 GGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTT 155270 |||||| ||| | ||||||| ||| | |||| |||||||||| |||| | || | Sbjct 2057535 GGAAGCTGCATCCGTTGATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCT 2057476 Query 155271 CCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCG 155327 ||||| | | || | ||| | | | |||||| ||||||||||| || ||| Sbjct 2057475 ACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2057419 Query 155328 TCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGC 155387 ||| || |||||||||||||| ||||||||| || || || || | | |||| || Sbjct 2057418 TCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGC 2057359 Query 155388 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTAT 155447 ||| ||| | | ||||| | ||||| || ||| ||||||| |||||||| || || Sbjct 2057358 TGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 2057299 Query 155448 CTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCC 155507 |||||||||||| |||| |||| | || ||||| || || ||||| || ||||||||||| Sbjct 2057298 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 2057239 Query 155508 CTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGG 155567 || |||||| | || ||||| ||||| ||||| || || || || ||||||||| || Sbjct 2057238 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 2057179 Query 155568 TTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGG 155627 ||| ||||| || ||| | ||| | ||||| || || | || ||| || | || Sbjct 2057178 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 2057119 Query 155628 TTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGG 155687 ||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || || Sbjct 2057118 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 2057059 Query 155688 TCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGC 155747 || | |||||||| ||||| |||||||| || | | | || |||||| | || Sbjct 2057058 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 2056999 Query 155748 TGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAA 155807 || ||||| || || | || ||| |||||| | ||| | || ||||| ||||| Sbjct 2056998 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 2056939 Query 155808 CCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCC 155864 ||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 2056938 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAA 2056882 Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || ||||| Sbjct 2056881 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 2056822 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 ||||||||||||||||| ||||| ||||||| |||| Sbjct 2056821 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 2056785 Score = 232 bits (256), Expect = 8e-56 Identities = 277/375 (74%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||||| Sbjct 2056511 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAA 2056452 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCA 155709 |||||||| |||||||| |||||||| || || || || || | |||||||| ||||| Sbjct 2056451 GAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 2056392 Query 155710 TCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769 |||||||| || | | | || |||||| | || || ||||| || || | || Sbjct 2056391 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 2056332 Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAAC 155829 ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||||| Sbjct 2056331 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 2056272 Query 155830 CAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAAC 155886 || || ||||| || |||| || || || ||| ||||| || ||| ||||| Sbjct 2056271 CAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAAC 2056215 Query 155887 CGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 || ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 2056214 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGAC 2056155 Query 155947 CTTGCTGCTGCTGAG 155961 || ||||||| |||| Sbjct 2056154 CTAGCTGCTGTTGAG 2056140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584563163906720