Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq36 600 1e-166 seq16 600 1e-166 seq18 468 6e-127 >seq36 Length=171746 Score = 600 bits (664), Expect = 1e-166 Identities = 734/999 (73%), Gaps = 12/999 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 55629 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 55688 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 55689 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 55745 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 55746 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 55805 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 55806 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 55865 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 55866 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 55925 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 55926 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 55985 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 55986 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 56045 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 56046 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 56105 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 56106 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 56165 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| || ||||| | ||||||| |||||| ||||| || || | || || Sbjct 56166 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 56225 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 56226 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 56285 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 56286 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 56342 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 56343 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 56402 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 56403 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 56462 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 56463 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 56522 Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || || || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 56523 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 56582 Query 68303 AACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || | || || ||| ||| | ||||||||| Sbjct 56583 AATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 56621 >seq16 Length=29110212 Score = 600 bits (664), Expect = 1e-166 Identities = 734/999 (73%), Gaps = 12/999 (1%) Strand=Plus/Minus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 16536125 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 16536066 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 16536065 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 16536009 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 16536008 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 16535949 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 16535948 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 16535889 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 16535888 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 16535829 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 16535828 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 16535769 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 16535768 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 16535709 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 16535708 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 16535649 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 16535648 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 16535589 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| || ||||| | ||||||| |||||| ||||| || || | || || Sbjct 16535588 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 16535529 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 16535528 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 16535469 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 16535468 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 16535412 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 16535411 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 16535352 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 16535351 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 16535292 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 16535291 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 16535232 Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || || || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 16535231 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 16535172 Query 68303 AACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || | || || ||| ||| | ||||||||| Sbjct 16535171 AATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 16535133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 67354 CAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTC 67413 || ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| | Sbjct 26298490 CAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAC 26298431 Query 67414 CAA 67416 ||| Sbjct 26298430 CAA 26298428 >seq18 Length=20869551 Score = 468 bits (518), Expect = 6e-127 Identities = 504/666 (76%), Gaps = 6/666 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 2056782 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 2056841 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 2056842 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 2056898 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 2056899 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 2056958 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 2056959 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 2057018 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 2057019 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 2057078 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 2057079 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 2057138 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 2057139 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 2057198 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 2057199 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 2057258 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 2057259 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 2057318 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| || ||||| | ||||||| |||||| ||||| || | | || || Sbjct 2057319 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAACTGCAACAGG 2057378 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 2057379 AGCTGAATATGCAACAACAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 2057438 Query 68006 ACGACC 68011 |||||| Sbjct 2057439 ACGACC 2057444 Score = 241 bits (266), Expect = 1e-58 Identities = 281/378 (74%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 2056137 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 2056196 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 2056197 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 2056253 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 2056254 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 2056313 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 2056314 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 2056373 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 2056374 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 2056433 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 2056434 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 2056493 Query 67706 CTCAGTAGTTTCTCTGAT 67723 || || ||||| ||||| Sbjct 2056494 TTCTGTGGTTTCCCTGAT 2056511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566683484509920