Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-37 seq6 170 2e-36 seq9 161 1e-33 seq10209 136 5e-26 seq11 86.0 8e-11 >seq4 Length=30110606 Score = 174 bits (192), Expect = 2e-37 Identities = 223/300 (74%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||| ||||| ||||| | | |||| | |||||| Sbjct 6029738 GAGTGGATGTTCTCAATCGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGAGACTTGG 6029797 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || ||| || ||||| |||||| ||||| ||||| || Sbjct 6029798 ACATCGGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCGTCTGACGCGGCAAAG 6029857 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| ||||| |||||||| ||| ||||| |||| | |||||| | Sbjct 6029858 AAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAGTCG 6029917 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | |||| | | | || || || || ||||||||||||| || || ||||| || || Sbjct 6029918 CGGTTGTCTTGAGAT-AGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 6029976 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 6029977 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 6030035 Score = 113 bits (124), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||||| |||||| || | ||||| |||||||| || || || Sbjct 6029458 ACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCTCGTTT 6029517 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| ||||| | |||||| || || ||||| ||||| || |||||| || || Sbjct 6029518 CTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGAA 6029577 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | |||| || || || ||||| | ||| ||| | |||||| ||||||||||| Sbjct 6029578 AGCTATGATTCGTTCAGCGAAGGTCT-GAGATCCTTC-----GATCCATTTCATCGCCCA 6029631 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | || || || ||||| ||||| ||||| Sbjct 6029632 CTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTC 6029685 >seq6 Length=26391736 Score = 170 bits (188), Expect = 2e-36 Identities = 222/300 (74%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| ||||| || || | | |||| | |||||| Sbjct 4051309 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGG 4051368 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| || || ||||| |||||| ||||| |||||||| Sbjct 4051369 ACATCGGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAG 4051428 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| ||||| |||||||| ||| ||||| |||| | |||||| | Sbjct 4051429 AAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTCTCCCAGTCG 4051488 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | |||| | | | || || || || ||||||||||||| || || ||||| || || Sbjct 4051489 CGGTTGTCTTGAGAT-AGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTT 4051547 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 4051548 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 4051606 Score = 116 bits (128), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | |||||| || | ||||| |||||||| || ||||| Sbjct 4051029 ACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTAAGGCCAGGCATGAGTCCTCGCTT 4051088 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| ||||| | |||||| || || ||||| ||||| || |||||| || || Sbjct 4051089 CTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGAA 4051148 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| || || || ||||| | ||| || || |||||| ||||||||||| Sbjct 4051149 AGCGATGATTCGTTCAGCGAAGGTCT-GAGATCC-----GTCGATCCATTTCATCGCCCA 4051202 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 | || || ||| || | || | || || || ||||| ||||| ||||| Sbjct 4051203 CTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTC 4051256 >seq9 Length=38094978 Score = 161 bits (178), Expect = 1e-33 Identities = 220/300 (73%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| ||||| || || | | |||| | |||||| Sbjct 5074122 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGG 5074181 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| || || ||||| |||||| ||||| |||||||| Sbjct 5074182 ACATCGGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCGTCTGACGCGGCGAAG 5074241 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| ||||| |||||||| ||| ||||| |||| |||||| | Sbjct 5074242 AAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGGCTGTTTTCCCAGTCG 5074301 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | |||| | | | || || || || ||||| ||||||| || || ||||| || || Sbjct 5074302 CGGTTGTCTTGTGAT-AGATCTACTTCTTCGGCAGTCCAGAAGGATGCTTCGGCTTTCTT 5074360 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGT-TGGGGTTG 869926 |||||||||||| | || ||||| |||| ||||| | ||| || | || |||||||| Sbjct 5074361 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA-TACAGAATCTGTCTGGGGTTG 5074419 >seq10209 Length=380 Score = 136 bits (150), Expect = 5e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254361 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCG 1254420 ||| || || || || |||||||||||||| || | | ||| ||| | |||||| Sbjct 2 GCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTGGACCTCTTGTTGT 61 Query 1254421 AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1254480 |||| || ||||||| |||||||| | |||| | |||| |||||||| || ||||||| Sbjct 62 AGTGGGCGAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGATGTCGTTCACGAACGAGT 121 Query 1254481 TCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1254540 |||||| ||||| | |||| ||||||| || ||||||||| || || || ||||| | Sbjct 122 TCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGGACTTGTTTCAGCACTT 181 Query 1254541 TGTAGATG 1254548 |||| ||| Sbjct 182 TGTAAATG 189 >seq11 Length=49703607 Score = 86.0 bits (94), Expect = 8e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||||||||||| | ||||| || || || ||||| |||||||| | |||| || || Sbjct 22950422 ACCCTCTTTGAACTCATCCTGGCTGCGAATTACCTGAACATCAAGACCTTGCTTGACCTA 22950363 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 || | ||||||| | ||||||||||| ||| | || || |||||||||| || Sbjct 22950362 ACATGTCAAACTGTGGCTGATATGATCAAGGGAAAGACTCCAGAAGAGATCCGCACAACG 22950303 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 22950302 TTCAACATCAAG 22950291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104085409016204