Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 156 7e-32 seq4 154 2e-31 seq9 147 3e-29 seq10209 127 3e-23 >seq6 Length=26391736 Score = 156 bits (172), Expect = 7e-32 Identities = 235/329 (71%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||||||| || ||| | |||||| | |||| | ||||| |||||||| || |||| Sbjct 4051029 ACCTTCGTCACGCGAGATGAGTTCGTTTGAGAAAGTA-AGGCCAGGCATGAGTCCTCGCT 4051087 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| ||||| | ||||| || || ||||| ||||| || |||||| || | Sbjct 4051088 TCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGA 4051147 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| || || || || || || | || || || |||||| |||||||||| Sbjct 4051148 AAGCGATGATTCGTTCAGCGAAGGTCTG-AGATCC-----GTCGATCCATTTCATCGCCC 4051201 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 ||| || || ||| || | || | || || || ||||| ||||| ||||| ||| Sbjct 4051202 ACTGAGCTTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCTCTCT 4051261 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | ||| |||| ||| || |||| |||||| ||| |||| |||||||| || | Sbjct 4051262 CTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCT 4051321 Query 794639 CGATGGCGATCTGGAAGCCATA-AAAGCA 794666 | || ||||||||||| || || |||||| Sbjct 4051322 CAATCGCGATCTGGAATCCGTAGAAAGCA 4051350 Score = 141 bits (156), Expect = 1e-27 Identities = 171/232 (74%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||| ||| || || ||||| |||||| ||| Sbjct 4051354 GCCTCCGAGACTTGGACATCGGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCG 4051413 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| |||||||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 4051414 TCTGACGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGG 4051473 Query 796270 GAG---ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | |||| || || || || ||||||||||| ||||| Sbjct 4051474 CTGTTCTCCCAGTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGAT 4051533 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| || ||||| |||| ||||||| Sbjct 4051534 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA 4051585 >seq4 Length=30110606 Score = 154 bits (170), Expect = 2e-31 Identities = 232/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||||||| || ||||| |||||| | |||| | ||||| |||||||| || || | Sbjct 6029458 ACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTA-AGGCCAGGCATGAGTCCTCGTT 6029516 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| ||||| | ||||| || || ||||| ||||| || |||||| || | Sbjct 6029517 TCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGA 6029576 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | | || || || || || || | || ||| | |||||| |||||||||| Sbjct 6029577 AAGCTATGATTCGTTCAGCGAAGGTCTG-AGATCCT-----TCGATCCATTTCATCGCCC 6029630 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 ||| || || ||| || | || | || || || ||||| ||||| ||||| ||| Sbjct 6029631 ACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCTCT 6029690 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | ||| |||| ||| || |||| |||||| ||| |||| ||||||||||| | Sbjct 6029691 CTTTGTTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATGTTCT 6029750 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| || || ||| Sbjct 6029751 CAATCGCGATCTGGAATCCGTAGAAG 6029776 Score = 138 bits (152), Expect = 2e-26 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||| || ||| || ||||| |||||| ||| Sbjct 6029783 GCCTCCGAGACTTGGACATCGGACATGAAACGTGAGGCGAGATTCTCTAGCACGATTCCG 6029842 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| || |||||||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 6029843 TCTGACGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGG 6029902 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | |||| || || || || ||||||||||| ||||| Sbjct 6029903 CTGTTCTCCCAGTCGCGGTTGTCTTGAGATAGATCTACTTCTTCGGCGGTCCAGAAGGAT 6029962 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| || ||||| |||| ||||||| Sbjct 6029963 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA 6030014 >seq9 Length=38094978 Score = 147 bits (162), Expect = 3e-29 Identities = 233/329 (71%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||||||| || ||||| |||||| | |||| | ||||| |||||||| || || | Sbjct 5073842 ACCTTCGTCACGCGAGATCAGTTCGTTTGAGAAAGTA-AGGCCAGGCATGAGACCTCGTT 5073900 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| ||||| | ||||| || || ||||| ||||| || |||||| || | Sbjct 5073901 TCTTAAGCCAGAAGATTGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCGACGCAAGCGA 5073960 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| || || || || || || | || || || |||||| |||| |||| Sbjct 5073961 AAGCGATGATTCGTTCAGCGAAGGTTTG-AGATCC-----GTCGATCCATGTCATAGCCC 5074014 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 ||| || || ||| || | || | || || || ||||| ||||| ||||| ||| Sbjct 5074015 ACTGGGCTTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCTCTCT 5074074 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | ||| |||| ||| || |||| |||||| ||| |||| |||||||| || | Sbjct 5074075 CTTTATTGTCTTTGATGTAAGTATCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCT 5074134 Query 794639 CGATGGCGATCTGGAAGCCATA-AAAGCA 794666 | || ||||||||||| || || |||||| Sbjct 5074135 CAATCGCGATCTGGAATCCGTAGAAAGCA 5074163 Score = 138 bits (152), Expect = 2e-26 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||| ||| || || ||||| |||||| ||| Sbjct 5074167 GCCTCCGAGACTTGGACATCGGACATGAAACGGGAAGCGAGATTCTCTAACACGATTCCG 5074226 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| |||||||||||||| ||||| ||||| || ||| ||||| |||| Sbjct 5074227 TCTGACGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGTTCGCCGTCGTTGAGG 5074286 Query 796270 GAG---ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | |||| || || || || ||||| ||||| ||||| Sbjct 5074287 CTGTTTTCCCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCAGTCCAGAAGGAT 5074346 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || |||||||||||||| ||| || ||||| |||| ||||||| Sbjct 5074347 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACA 5074398 >seq10209 Length=380 Score = 127 bits (140), Expect = 3e-23 Identities = 142/188 (76%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--T 1485584 ||| || || || || |||||||||||||| || | | ||| ||| | ||||| | Sbjct 2 GCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTGGACCTCTTGTTGT 61 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 |||| ||| || |||| |||||||| | |||| | |||| |||||||| || ||||| Sbjct 62 AGTGGGCG--AGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGATGTCGTTCACGAACGA 119 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| ||||| | ||| ||||||| || ||||||||| || || || ||||| Sbjct 120 GTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGGACTTGTTTCAGCAC 179 Query 1485705 CTTGTAAA 1485712 ||||||| Sbjct 180 TTTGTAAA 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912287989836068