Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 5e-15 seq8 96.9 5e-15 >seq13 Length=24101694 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || |||||| | || || || | | Sbjct 11436305 TGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCTG 11436364 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || || || ||||| || || || ||||| | Sbjct 11436365 ACACCATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAGC 11436424 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| |||||||| |||| ||| | | || || | ||||| || | Sbjct 11436425 AAAGGTTGATCTTTGCTGGTAAACAGCTAGAGGATGGTCGTACCTTGGCGGATTACAACA 11436484 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | || || || | ||||||||||| |||| Sbjct 11436485 TCCAGAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGTGGTA 11436532 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || || || |||| || || || Sbjct 9157674 TGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCCG 9157615 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || || || || || ||||||||||| || ||||| | Sbjct 9157614 ACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 9157555 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || |||||||| | || ||| | || || | ||||| || | Sbjct 9157554 AAAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACCTTGGCTGATTACAACA 9157495 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || |||| || || | || |||||||| |||| Sbjct 9157494 TTCAGAAAGAATCAACCCTCCACTTGGTTCTCCGTTTAAGAGGTGGTA 9157447 >seq8 Length=27720346 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || || || |||| || || || Sbjct 6053081 TGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCCG 6053022 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || || || ||||||||||| || ||||| | Sbjct 6053021 ACACCATCGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 6052962 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| |||||||| | || ||| | || || | ||||| || | Sbjct 6052961 AAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCTGATTACAACA 6052902 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || |||| || || | || |||||||| |||| Sbjct 6052901 TCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTAAGAGGTGGTA 6052854 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| | || || || || |||||| | || || || | | Sbjct 8687466 TGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGTTCTG 8687525 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || || || ||||| || || || ||||| | Sbjct 8687526 ACACCATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAGC 8687585 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| |||||||| |||| ||| | | || || | ||||| || | Sbjct 8687586 AAAGGTTGATCTTTGCTGGTAAACAGCTAGAGGATGGTCGTACCTTGGCGGATTACAACA 8687645 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | || || || | ||||||||||| |||| Sbjct 8687646 TTCAGAAAGAATCAACCCTTCACTTGGTTCTCCGATTAAGAGGTGGTA 8687693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785800714699040