Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_024150.1 Length=31709 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 1e-12 >seq4 Length=30110606 Score = 86.0 bits (94), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 30979 AATCAGCTGAGCTATGCGATCTCCCTTCTTCACAGGAAATATATCCTTAGAATTGTTGAT 31038 ||||| |||||| || ||||| ||| ||||||| ||| | | | ||||| |||| Sbjct 14123506 AATCAACTGAGCGATTCGATCACCCAACTTCACATCAAACTCAACATCAGAATGATTGAA 14123565 Query 31039 CAGCAACACCTTGATAGGGCCGGTGTAATCAGGATCAATAACTCCAGCTCCAACATCAAT 31098 || | ||| | ||| || ||||||||| |||||| || ||||||||||||||||| Sbjct 14123566 CAAAATCACACCAACAGGTCCTCTGTAATCAGCATCAATCACACCAGCTCCAACATCAAT 14123625 Query 31099 ACCAGCG----CAAGCTAGTCCAGATCTAGGAGCGAT 31131 | | | ||||| | |||||||| |||||||| Sbjct 14123626 -CGAATGTTTCCAAGCCAAACCAGATCTCGGAGCGAT 14123661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101302415432424