Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 4e-12 seq4 87.8 4e-12 >seq6 Length=26391736 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 ||||| ||||| || |||||||| ||||| || || ||||| | ||||| |||||| Sbjct 4051151 GCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTTCTGGCTT 4051092 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 |||||||| ||| | |||||||| || | || || || || |||||||| | || ||| Sbjct 4051091 AAGAAGCGAGGACTCATGCCTGGCCTTACTTTCTCAAACGAACTCATCTCGCGTGACGAA 4051032 Query 131987 G 131987 | Sbjct 4051031 G 4051031 >seq4 Length=30110606 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT-TCCGCTAATTTTTCTACAAG 131859 |||||||| | ||||| || |||||||| ||| ||| || | | || || | | Sbjct 6029643 AAGAAAGCTCAGTGGGCGATGAAATGGATCGAAG--GATCTCAG--ACCTTCGCTGAACG 6029588 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 | | ||||||| ||||| || |||||||| ||||| || || ||||| | ||||| Sbjct 6029587 AATCATAGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCAATCTT 6029528 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 ||||||||||| || ||| | |||||||| || | || || || || | |||||| | Sbjct 6029527 CTGGCTTAAGAAACGAGGACTCATGCCTGGCCTTACTTTCTCAAACGAACTGATCTCGCG 6029468 Query 131980 AGATGAAG 131987 || |||| Sbjct 6029467 TGACGAAG 6029460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186246952876732