Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq36 560 3e-155 seq16 560 3e-155 seq18 459 8e-125 >seq36 Length=171746 Score = 560 bits (620), Expect = 3e-155 Identities = 705/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| ||||| || ||||||| || | || ||| || | Sbjct 56597 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 56539 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 56538 TTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 56479 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 56478 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 56419 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 56418 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 56361 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 56360 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 56301 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 56300 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 56241 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||| ||| | ||| Sbjct 56240 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGT 56181 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 || || |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 56180 CAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 56121 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 56120 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 56061 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 56060 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 56002 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 56001 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGA 55942 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 55941 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 55882 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 55881 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 55822 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 55821 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 55762 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| || | || || || Sbjct 55761 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 55702 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 55701 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 55642 Query 29616 T 29616 | Sbjct 55641 T 55641 >seq16 Length=29110212 Score = 560 bits (620), Expect = 3e-155 Identities = 705/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| ||||| || ||||||| || | || ||| || | Sbjct 16535157 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 16535215 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 16535216 TTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 16535275 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 16535276 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 16535335 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 16535336 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 16535393 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 16535394 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 16535453 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 16535454 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 16535513 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||| ||| | ||| Sbjct 16535514 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGT 16535573 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 || || |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 16535574 CAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 16535633 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 16535634 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 16535693 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 16535694 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 16535752 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 16535753 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGA 16535812 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 16535813 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 16535872 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 16535873 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 16535932 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 16535933 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 16535992 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| || | || || || Sbjct 16535993 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 16536052 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 16536053 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 16536112 Query 29616 T 29616 | Sbjct 16536113 T 16536113 >seq18 Length=20869551 Score = 459 bits (508), Expect = 8e-125 Identities = 549/743 (74%), Gaps = 2/743 (0%) Strand=Plus/Minus Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 ||||||| || ||||||||||||| ||||||| || || | |||| | || | Sbjct 2057535 GGAAGCTGCATCCGTTGATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCT 2057476 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 ||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 2057475 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2057416 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || |||| || |||| || Sbjct 2057415 GGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGCTGT 2057356 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||| ||| | ||||| || |||| || | |||||| | || || || Sbjct 2057355 TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 2057296 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| ||| | || ||||| || || || |||||||| |||||||| || Sbjct 2057295 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 2057236 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||| | || || ||||| || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 2057235 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 2057176 Query 29235 GCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || || | | ||| | | || || || ||| | ||| || | |||| Sbjct 2057175 CTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 2057117 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 2057116 ACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCC 2057057 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||||||| |||||| ||| |||||| |||| |||||| | || | Sbjct 2057056 GATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGG 2056997 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 29473 | |||||||| ||||| |||||||| |||| || || || ||| ||||| || || | Sbjct 2056996 CTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 2056937 Query 29474 TGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTT 29533 | || ||||| || || ||||| || | | || | | || ||||| |||||||||| Sbjct 2056936 TAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTT 2056877 Query 29534 GGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTC 29593 |||||||| || | || || |||||||| || | ||||| |||||||| |||||||||| Sbjct 2056876 GGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 2056817 Query 29594 ATAACTTCCCACTTGATCTGGCT 29616 | |||||||| || || || ||| Sbjct 2056816 ACAACTTCCCTCTAGACCTAGCT 2056794 Score = 269 bits (298), Expect = 8e-68 Identities = 256/327 (78%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||||||||| ||||| ||||| ||||| ||||||||||| ||| Sbjct 2056475 GGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 2056416 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||||||||||| |||||| ||| |||||| |||| |||||| | Sbjct 2056415 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 2056356 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 || || |||||||| ||||| |||||||| |||| || || || ||| ||||| || Sbjct 2056355 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 2056296 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || || ||||| || || ||||| || | | || | | || ||||| |||||| Sbjct 2056295 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 2056236 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| || | || || |||||||| || | ||||| |||||||| |||||| Sbjct 2056235 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2056176 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| || || || ||| Sbjct 2056175 GCTCACAACTTCCCTCTAGACCTAGCT 2056149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146600789571352