Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 seq20 89.7 5e-13 seq19 89.7 5e-13 seq8 89.7 5e-13 seq1 89.7 5e-13 >seq13 Length=24101694 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| ||||||||||| || || ||| || Sbjct 9157458 AAACGGAGAACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGG 9157517 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||||||||||||||||| |||| | | || ||||| ||||| |||||||| Sbjct 9157518 CCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCC 9157577 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || ||| || | | || | || |||| ||| || || | || Sbjct 9157578 TTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTG 9157637 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| || ||||| | |||||| ||||| Sbjct 9157638 ATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 9157675 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| || ||| || ||| || Sbjct 21466880 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGACCATCCTCA 21466821 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | |||| |||||||| || || ||||| || ||||| || || Sbjct 21466820 AGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 21466761 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | ||| |||| ||||||||| | || | ||||| Sbjct 21466760 ATCTTAGCCTTCACATTGTCAATAGTGTCGGAGCTCTCCACTTCCAAGGTGATAGTTTTG 21466701 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | ||| |||||||| Sbjct 21466700 CCGGTCAAAGTCTTGACGAAGATCTGCAT 21466672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| || || |||||||| ||| | || || ||| || ||||| ||||||| Sbjct 11436725 GACTCTTTCTGGATATTGTAGTCAGCT-AGCGTGCGACCATCCTCAAGCTGCTTACCGGC 11436667 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | ||| || || ||||| || ||||||||||| ||| || ||| | Sbjct 11436666 AAAGATAAGCCTCTGCTGGTCCGGAGGAATCCCTTCTTTATCCTGAATCTTAGCTTTAAC 11436607 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||| | ||| || |||| || | ||||||||||||| || || Sbjct 11436606 ATTGTCAATCGTATCCGAACTCTCAACCTCGAGGGTGATGGTTTTACCAGTCAACGTCTT 11436547 Query 132109 TATGAAAATCTGCAT 132123 | || |||||||| Sbjct 11436546 CACAAAGATCTGCAT 11436532 >seq20 Length=30099736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | | ||||| || ||||||||||| || || |||||| Sbjct 1019651 CAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACG 1019710 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||||| |||| | | ||| || || ||||| || ||||| Sbjct 1019711 GCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTC 1019770 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| || | | || | || || | ||| || |||| || Sbjct 1019771 CTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGT 1019830 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | |||||| ||||| Sbjct 1019831 GATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 1019869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || |||||| |||||| ||||| ||||||| | Sbjct 5698255 GACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCTTCTAGCTGCTTACCGGCA 5698196 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || | || ||||||||||| || ||||| ||||| Sbjct 5698195 AAGATAAGCCTTTGCTGATCTGGAGGGATACCTTCCTTATC 5698155 >seq19 Length=26736940 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | |||||||||| || ||| |||| || || |||||| ||| || Sbjct 4054795 AACCAAGTGGAGAGTTGACTCTTTCTGGATGCTGTAATCAGCCAAGGTACGACCATCCTC 4054854 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||| |||||| | ||||||| || || || || ||||| || ||||||||||| Sbjct 4054855 GAGCTGTGTACCGGCAAAGATTAGCCGTTGCTGGTCAGGAGGGATTCCTTCTTTATC 4054911 >seq8 Length=27720346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | | ||||| || ||||||||||| || || |||||| Sbjct 26612524 CAAACGAAGAACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACG 26612465 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||||| |||| | | ||| || || ||||| |||||||| Sbjct 26612464 GCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATGCCTTC 26612405 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || || | ||| || |||| || Sbjct 26612404 CTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGT 26612345 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | |||||| ||||| Sbjct 26612344 AATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 26612306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| || |||||||| || || ||| || Sbjct 6052865 AAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGCCAAGGTGCGG 6052924 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| | |||| | | || ||||| ||||| |||||||| Sbjct 6052925 CCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCC 6052984 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || || || | | || | || |||| ||| || || | || Sbjct 6052985 TTGTCCTGGATCTTAGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTG 6053044 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| || ||||| | |||||| ||||| Sbjct 6053045 ATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6053082 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| ||||||||||| || || |||||| Sbjct 8687682 AATCGGAGAACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCCGCCAAGGTACGA 8687623 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 ||| || ||||||||||| | | |||| | | || ||||| ||||| || ||||| Sbjct 8687622 CCATCCTCTAGCTGTTTACCAGCAAAGATCAACCTTTGCTGATCCGGAGGGATCCCTTCC 8687563 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| || || | | || | || || | ||| || |||| || Sbjct 8687562 TTGTCCTGAATCTTAGCCTTAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTA 8687503 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | |||||| ||||| Sbjct 8687502 ATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8687465 >seq1 Length=23241285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | |||||||||| || |||||||| || || |||||| ||| || Sbjct 3748169 AACCAAGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGCCAAGGTACGACCATCCTC 3748228 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||| |||||| | |||| || || || || || ||||| || ||||||||||| Sbjct 3748229 GAGCTGTGTACCGGCAAAGATAAGTCGTTGCTGGTCAGGAGGGATCCCTTCTTTATC 3748285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476389504300320