Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 5e-13 seq12 82.4 7e-11 seq11 82.4 7e-11 >seq8 Length=27720346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| || || | ||||| ||| | ||||| | || || || ||| | Sbjct 6052626 ATGCAAATCTTTGTTAAGACTCTCACCGGTAAAACCATCACTTTGGAGGTTGAGAGCTCA 6052567 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| || || ||||||||||| || || || ||||| Sbjct 6052566 -GATACTATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGATCA 6052508 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | ||| || || || || |||| | | | | |||||||| Sbjct 6052507 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACCTTGGCTGATTACAA 6052448 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| |||||| | ||||| ||| | | ||||||| || Sbjct 6052447 TATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTGAGAGGTGG 6052400 >seq12 Length=33044737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || || | ||||| | || ||||| | Sbjct 24357679 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 24357620 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || ||||| || || || || || ||| Sbjct 24357619 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 24357560 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATTACAA 25353 || ||||| || | | ||| |||||||||||||||| | | | | | |||| ||||||| Sbjct 24357559 CAGAGACTAATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTT-AGCGGATTACAA 24357501 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 |||||| ||||| || || |||| Sbjct 24357500 TATTCAGAAAGAGTCAACTCTTCA 24357477 >seq11 Length=49703607 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || || | ||||| | || ||||| | Sbjct 21795561 ATGCAGATATTTGTCAAGACTTTGACGGGCAAGACCATCACTCTAGAGGTCGAGAGCTCT 21795502 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || ||||| || || || || || ||| Sbjct 21795501 GATACGATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCCCACCGGACCAG 21795442 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATTACAA 25353 || ||||| || | | ||| |||||||||||||||| | | | | | |||| ||||||| Sbjct 21795441 CAGAGACTAATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTT-AGCGGATTACAA 21795383 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 |||||| ||||| || || |||| Sbjct 21795382 TATTCAGAAAGAGTCAACTCTTCA 21795359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444887364339840