Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 244 2e-58 seq4 241 2e-57 seq9 228 1e-53 seq10209 114 2e-19 >seq6 Length=26391736 Score = 244 bits (270), Expect = 2e-58 Identities = 399/565 (71%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 4051585 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 4051527 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 ||||||||||| || || || || |||| | |||||| | || | | Sbjct 4051526 TGGACCGCCGAAGAAGTAGATCTATCTCAAGACAACCGCGACTGGGAGAACAGCCTCAAC 4051467 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| ||||| |||||||| |||||||||||||| || |||||| || || || Sbjct 4051466 GACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCGTCAGACGGAAT 4051408 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 |||| ||||| || || ||| || ||| || |||||| | | ||||| ||| Sbjct 4051407 CGTGTTAGAGAATCTCGCTTCCCGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 4051348 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || || || |||||||| || | ||| ||||| | Sbjct 4051347 TTTCTACGGATTCCAGATCGCGATTGAGAATATCCACTCCGAGATGTACAGTCTCCTCCT 4051288 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || ||| |||| ||| |||| ||||| ||||| ||||| || || || | Sbjct 4051287 CGATACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACCAT 4051228 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-G 1456168 || | || ||| || || | ||||||||||| |||||| || || ||| | Sbjct 4051227 CCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAC-----GGATCTCAG 4051173 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 || ||| || || || || ||| || || ||||||| || ||||| ||||| || || Sbjct 4051172 AC-CTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAG 4051114 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC- 1456286 |||||| | ||||| ||||| |||||||| || |||||||| || || | |||| | Sbjct 4051113 CTTCTGCTCAATCTTCTGGCTTAAGAAGCGAGGACTCATGCCTGGCCT--TACTTTCTCA 4051056 Query 1456287 AACGAATTTATCAGTCGCGACGAAG 1456311 |||||| | ||| || ||||||| Sbjct 4051055 AACGAACTCATCTCGCGTGACGAAG 4051031 >seq4 Length=30110606 Score = 241 bits (266), Expect = 2e-57 Identities = 398/565 (70%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 6030014 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 6029956 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 ||||||||||| || || || || |||| | |||||| | || | | Sbjct 6029955 TGGACCGCCGAAGAAGTAGATCTATCTCAAGACAACCGCGACTGGGAGAACAGCCTCAAC 6029896 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| ||||| |||||||| |||||||||||||| ||| ||||| || || || Sbjct 6029895 GACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTT-GCCGCGTCAGACGGAAT 6029837 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 |||| ||||| || ||| || || ||| || |||||| | | ||||| ||| Sbjct 6029836 CGTGCTAGAGAATCTCGCCTCACGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 6029777 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || || ||||||||||| || | ||| ||||| | Sbjct 6029776 CTTCTACGGATTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGTCTCCTCCT 6029717 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || ||| |||| ||| |||| ||||| ||||| ||||| || || || | Sbjct 6029716 CGATACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCAT 6029657 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-G 1456168 || | || ||| || || | ||||||||||| |||||| | ||| ||| | Sbjct 6029656 CCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC-----GAAGGATCTCAG 6029602 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 || ||| || || || || | | || || ||||||| || ||||| ||||| || || Sbjct 6029601 AC-CTTCGCTGAACGAATCATAGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAG 6029543 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC- 1456286 |||||| | ||||| ||||| ||||| || || |||||||| || || | |||| | Sbjct 6029542 CTTCTGCTCAATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGCCT--TACTTTCTCA 6029485 Query 1456287 AACGAATTTATCAGTCGCGACGAAG 1456311 |||||| | ||| || ||||||| Sbjct 6029484 AACGAACTGATCTCGCGTGACGAAG 6029460 >seq9 Length=38094978 Score = 228 bits (252), Expect = 1e-53 Identities = 393/564 (70%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 5074398 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 5074340 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 ||||| ||||| || || || || |||| | |||||| || | | Sbjct 5074339 TGGACTGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAGCCTCAAC 5074280 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| ||||| |||||||| |||||||||||||| || |||||| || || || Sbjct 5074279 GACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTT-CGCCGCGTCAGACGGAAT 5074221 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 |||| ||||| || || ||| || ||| || |||||| | | ||||| ||| Sbjct 5074220 CGTGTTAGAGAATCTCGCTTCCCGTTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 5074161 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || || || |||||||| || | ||| ||||| | Sbjct 5074160 TTTCTACGGATTCCAGATCGCGATTGAGAATATCCACTCCGAGATGTACAGTCTCCTCCT 5074101 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || ||| |||| ||| |||| ||||| ||||| ||||| || || || | Sbjct 5074100 CGATACTTACATCAAAGACAATAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCAT 5074041 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || ||| || ||| | ||||| |||| |||||| || || ||| | Sbjct 5074040 CCCTTGCGTCGCGAAGAAAGCCCAGTGGGCTATGACATGGATCGAC-----GGATCTCAA 5073986 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || || || || ||| || || ||||||| || ||||| ||||| || || Sbjct 5073985 ACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGC 5073926 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-A 1456287 |||||| | ||||| ||||| ||||| || || |||||||| || || | |||| | | Sbjct 5073925 TTCTGCTCAATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGCCT--TACTTTCTCAA 5073868 Query 1456288 ACGAATTTATCAGTCGCGACGAAG 1456311 ||||| | ||| || ||||||| Sbjct 5073867 ACGAACTGATCTCGCGTGACGAAG 5073844 >seq10209 Length=380 Score = 114 bits (126), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 188 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 135 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 134 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 75 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 74 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 15 Query 725091 CGCCTGATCATGC 725103 || || || ||| Sbjct 14 CGTCTCCTCCTGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174222034204344