Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 140 4e-28 seq12 136 5e-27 seq16 134 2e-26 seq11 132 7e-26 seq10 132 7e-26 seq7 131 2e-25 >seq9 Length=38094978 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 32305348 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 32305289 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| |||||||||||| |||| ||||||||| ||| || Sbjct 32305288 ATTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGA 32305229 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 32305228 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATAT 32305169 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||| ||||| Sbjct 32305168 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 Score = 113 bits (124), Expect = 6e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | |||||||||||| |||||||||||| | | ||| | || || | Sbjct 32305006 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 32304947 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| || ||||| || | || || | ||||| | Sbjct 32304946 TAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 32304887 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | ||| || ||||||||| | || ||| Sbjct 32304886 ATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAGA 32304827 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||||||| ||||| | | |||| ||| || Sbjct 32304826 GTTTTAAATCCAAAGAAATCGTATTCAAAATC 32304795 >seq12 Length=33044737 Score = 136 bits (150), Expect = 5e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | ||| | || | |||||| |||| |||||| Sbjct 564399 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 564340 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 564339 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 564280 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || || || | ||| || | |||||| |||||| ||||||||||| Sbjct 564279 TACACCAATACCCCCAGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 564220 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| || ||||| |||||| Sbjct 564219 TCCCTCGATGCTATCATCCTTCATGCAAATCAGAAAGCAGCTA 564177 >seq16 Length=29110212 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 22277660 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 22277601 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| ||||||||| ||| || Sbjct 22277600 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGA 22277541 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 22277540 AACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 22277481 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||| ||||| Sbjct 22277480 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 Score = 113 bits (124), Expect = 6e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | |||||||||||| |||||||||||| | | ||| | || || | Sbjct 22277320 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 22277261 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| || ||||| || | || || | ||||| | Sbjct 22277260 TAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 22277201 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | ||| || ||||||||| | || ||| Sbjct 22277200 ATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAGA 22277141 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||||||| ||||| | | |||| ||| || Sbjct 22277140 GTTTTAAATCCAAAGAAATCGTATTCAAAATC 22277109 >seq11 Length=49703607 Score = 132 bits (146), Expect = 7e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 646820 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 646761 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 646760 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 646701 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || ||||| | ||| || | |||||| |||||| |||||||| || Sbjct 646700 TACACCAATACCGCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAAAT 646641 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| || | ||| |||||| Sbjct 646640 TCCCTCGATGCTATCATCCTTCATGCAAATCAAAAAGCAGCTA 646598 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | ||||| || |||||| ||||| | | ||||||| || || ||| Sbjct 648618 AAGACTCTACGACTATAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 648559 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | |||| Sbjct 648558 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATTC 648499 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || |||| | ||| ||| ||||| |||| || || | |||||||| Sbjct 648498 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGATCGGAAGGAATTACATTCCAC 648439 Query 68914 AGATCGTATTGTAGAATTCC 68933 | || ||| |||||||| Sbjct 648438 ATGTCAGGTTGAAGAATTCC 648419 >seq10 Length=25316904 Score = 132 bits (146), Expect = 7e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 542226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 542167 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| |||| || || || || || Sbjct 542166 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 542107 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || ||||| | ||| || | |||||| |||||| ||||||||||| Sbjct 542106 TACACCAATACCCCCTGCTAATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 542047 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||||||||| ||||| || ||||| |||||| Sbjct 542046 TCCTTCGATGCTATCATCCTTCATGCAAACCAGAAAGCAGCTA 542004 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | ||||| || |||||| ||||| | | ||||||| || || ||| Sbjct 544020 AAGACTCTACGACTATAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 543961 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | |||| Sbjct 543960 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATTC 543901 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || |||| | ||| ||| ||||| |||| || || | |||||||| Sbjct 543900 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATTACATTCCAC 543841 Query 68914 AGATCGTATTGTAGAATTCC 68933 | || ||| |||||||| Sbjct 543840 ATGTCAGGTTGAAGAATTCC 543821 >seq7 Length=33617777 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 26389526 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 26389467 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| |||||||| |||| |||||||| ||| || Sbjct 26389466 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGA 26389407 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 26389406 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 26389347 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||| ||||| Sbjct 26389346 GCCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | |||||||||||| |||||||||||| | | ||| | || || | Sbjct 26389186 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 26389127 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || || || || ||||| || ||||| || | || || | ||||| | Sbjct 26389126 TAAGTTTGGATCGCGGAATCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 26389067 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | | | || ||||||||| | || ||| Sbjct 26389066 ATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTCTTAAGAGGTATGATCTCTCAAGA 26389007 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||||||| ||||| | | |||| ||| || Sbjct 26389006 GTTTTAAATCCAAAGAAATCGTATTCAAAATC 26388975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686589284371680