Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 1e-14 seq12 89.7 4e-13 seq10 89.7 4e-13 >seq11 Length=49703607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||| Sbjct 3083027 ATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGG 3083086 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 3083087 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 3083146 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 3083147 AAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGC 3083198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||| Sbjct 3083591 ATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGG 3083650 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 3083651 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 3083710 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 3083711 AAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCGTTTAACATTGC 3083762 >seq12 Length=33044737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||| Sbjct 2862467 ATCCTGATGATCGACGAATCATAATGTCGGCTTGGAATCCTCCTGATCTGAAGTTGATGG 2862526 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || | |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 2862527 CACTTCCTCCATGCGACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 2862586 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 2862587 AAATGTATCAGCGCTCAGCCGATATGGGGCTCGGTGTACCGTTTAACATTGC 2862638 >seq10 Length=25316904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || || ||| ||| ||||| || | || | | ||||||| Sbjct 2742245 ATCCTGATGATCGACGAATCATTATGTCCGCTTGGAATCCTCCTGATCTGGAGTTGATGG 2742304 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| |||||||| ||| ||||| ||||| ||||||| Sbjct 2742305 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAAATGGAGAACTTTCATGTC 2742364 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||| | |||| || ||||| || | || ||||||||||| || Sbjct 2742365 AAATGTATCAGCGCTCAGCCGATATGGGTCTCCGTGTACCGTTTAACATTGC 2742416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397275745258060