Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4 123 8e-23 seq6 114 4e-20 seq9 96.9 1e-14 >seq4 Length=30110606 Score = 123 bits (136), Expect = 8e-23 Identities = 318/476 (67%), Gaps = 20/476 (4%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 |||||| | ||| ||||| | || | ||||||||||| || ||||| ||||| Sbjct 6029889 GAACGCCACTTCATCAAACACGTCCTCGCCTTCTTTGCCGCGTCAGACGGAATCGTGCTA 6029830 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | |||||| | ||| | ||| | | ||||| || |||| Sbjct 6029829 GAGAATCTCGCCTCACGTTTCATGTCCGATGTCCAAGTCT---CGGAGGCGCGTGCCTTC 6029773 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| ||| || |||||||| ||| ||||| | ||||||| | || | Sbjct 6029772 TACGGATTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGTCTCCTCCTCGAT 6029713 Query 443583 ACACTAATTCCGAACGAAGACGAACAGCG-GTCCATCTTCTCATCGTTCATGA--CCACG 443639 || || || || || || || || | | |||||| || || ||| ||| Sbjct 6029712 ACT-TACATC--AAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAAACCATC 6029656 Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAG- 443698 || || || | | || ||| ||||| | | ||| ||||| || |||||| Sbjct 6029655 CCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAAGGA-----TCTCAGA 6029601 Query 443699 -CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 ||||| || ||| | | ||||| ||| |||||||| | || || ||| |||| Sbjct 6029600 CCTTCGCTGAACGAATCATAGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCT 6029541 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || || ||||||||| | || || || ||||| |||| || || || || ||| Sbjct 6029540 TCTGC-TCAATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGCCTTACTTTCTCAAAC 6029482 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACAC 443873 ||||||||| || ||||| ||| | || ||||||||||| || ||||||||||| Sbjct 6029481 GAACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCGTGCCTTCTCTACAC 6029426 >seq6 Length=26391736 Score = 114 bits (126), Expect = 4e-20 Identities = 317/477 (66%), Gaps = 22/477 (5%) Strand=Plus/Minus Query 443406 GAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 |||||| | ||| ||||| | || | |||||||| || || ||||| ||||| Sbjct 4051460 GAACGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGACGGAATCGTGTTA 4051401 Query 443466 GAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 |||||||| | | |||||| | ||| | ||| | | ||||| || ||| Sbjct 4051400 GAGAATCTCGCTTCCCGTTTCATGTCCGATGTCCAAGTCT---CGGAGGCGCGTGCTTTC 4051344 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| ||| || ||||| || ||| ||||| | ||||||| | || | Sbjct 4051343 TACGGATTCCAGATCGCGATTGAGAATATCCACTCCGAGATGTACAGTCTCCTCCTCGAT 4051284 Query 443583 ACACTAATTCCGAACGAAGACGAACAGCG-GTCCATCTTCTCATCG---TTCATGACCAC 443638 || || || || || || || || | | |||||| || || || | ||||| Sbjct 4051283 ACT-TACATC--AAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGA-GACCAT 4051228 Query 443639 GCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAG 443698 || || || | | || ||| ||||| | | ||| |||| || |||||| Sbjct 4051227 CCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGA-----TCTCAG 4051173 Query 443699 --CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGC 443756 ||||| || ||| | ||||||| ||| |||||||| | || || ||| ||| Sbjct 4051172 ACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGC 4051113 Query 443757 TTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAA 443816 || || || ||||||||| | || ||||| ||||| |||| || || || || || Sbjct 4051112 TTCTGC-TCAATCTTCTGGCTTAAGAAGCGAGGACTCATGCCTGGCCTTACTTTCTCAAA 4051054 Query 443817 CGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACAC 443873 |||||| ||| || ||||| ||| | || ||||||||||| || ||||||||||| Sbjct 4051053 CGAACTCATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCGTGCCTTCTCTACAC 4050997 >seq9 Length=38094978 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| || ||| | ||||||| ||| |||||||| | || || ||| ||||| Sbjct 5073983 CTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTT 5073924 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || || ||||||||| | || || || || || |||| || || || || |||| Sbjct 5073923 CTGC-TCAATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGCCTTACTTTCTCAAACG 5073865 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACAC 443873 |||||||| || ||||| ||| | || ||||||||||| || ||||||||||| Sbjct 5073864 AACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGCTTGCCTTCTCTACAC 5073810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587578715147340