Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 149 7e-31 seq4 132 5e-26 seq9 129 6e-25 seq3333 87.8 2e-12 >seq6 Length=26391736 Score = 149 bits (164), Expect = 7e-31 Identities = 506/768 (66%), Gaps = 38/768 (5%) Strand=Plus/Minus Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| ||| ||| | || |||||||| ||||| ||||||||||| ||| || Sbjct 4051472 CTCAACGACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGAC 4051413 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAG 59786 ||||| ||| | || ||| | | | | |||| | | |||||||| | | ||| Sbjct 4051412 GGAATCGTGTTAGAGAATCTCGC--TTCCCGTTTC-ATGTCCGATGTCCAAGTCTCGGAG 4051356 Query 59787 GCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTC 59845 || || | ||||||| | ||| ||| | ||| |||||||||||||| |||| Sbjct 4051355 GCGCGTGCTTTCTACGGATTCCAGATCGCG-ATTGAGAATATCCACTCCGAGATGTACAG 4051297 Query 59846 GCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCAT 59905 ||| | |||||| | |||| || |||||| | ||| ||||| || || Sbjct 4051296 TCTCCTCCTCGATACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGAT 4051237 Query 59906 AGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTG 59964 ||||| |||| || || | ||||| | ||||| ||| | ||||| | | | Sbjct 4051236 TGAGACCATCCCTTGC-GTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC-GAC--G 4051181 Query 59965 GAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTC 60020 || | ||| || || |||| |||| ||||| || ||||| ||||| ||||||||| Sbjct 4051180 GATC-TCAGACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTC 4051122 Query 60021 TCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 || || ||||| | || |||||||| || ||||| || |||||||| ||||| | | Sbjct 4051121 TCCGGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAGCGAGGACTCATGCCTGGCCTTACT 4051062 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCT 60139 ||||| ||||| || || || || ||||| || || || || || || ||| | || Sbjct 4051061 TTCTCAAACGAACTCATCTCGCGTGACGAAGGTCTACACTGCGACTTCGC-GTGCCTTCT 4051003 Query 60140 CTATTCACACCTATTGGAAAA--ATGCCCTTCCAAGGATATTCACAAGATTGTTCA--GT 60195 ||| | | ||| || | | || | ||| | | || || || || Sbjct 4051002 CTACACGCTCCT----CAACACGAAGCTGAGCGAAG----AGCGCGTGA-AGTCCATCGT 4050952 Query 60196 GGGC----TTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCAT 60250 | || ||| || | ||||| ||||| | || |||||||||||| | | Sbjct 4050951 GTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCATGCGCGTTGGT 4050892 Query 60251 AGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGC 60310 || ||| || || |||| ||||| ||| ||||||| ||||| | || ||| Sbjct 4050891 TGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGG 4050832 Query 60311 CCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCAT 60370 | |||| | || | ||||| |||| ||||||||| || |||||||| || Sbjct 4050831 TGCGCTTGGCTACGGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTAT 4050772 Query 60371 CTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||| | |||||||||| |||||||||||||| || ||||| ||||| Sbjct 4050771 CTCGCTTCAAGGGAAGACTAACTTCTTTGAGAAACGCGTCGGCGATTA 4050724 >seq4 Length=30110606 Score = 132 bits (146), Expect = 5e-26 Identities = 500/765 (65%), Gaps = 32/765 (4%) Strand=Plus/Minus Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| ||| ||| | || |||||||| ||||| |||||||| || ||| || Sbjct 6029901 CTCAACGACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTTGCCGCGTCAGAC 6029842 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAG 59786 ||||| ||| | || ||| | | | || |||| | | |||||||| | | ||| Sbjct 6029841 GGAATCGTGCTAGAGAATCTCGCCTC--ACGTTTC-ATGTCCGATGTCCAAGTCTCGGAG 6029785 Query 59787 GCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTC 59845 || || | ||||||| | ||| ||| | ||| ||||||||||||| |||| Sbjct 6029784 GCGCGTGCCTTCTACGGATTCCAGATCGCG-ATTGAGAACATCCACTCCGAGATGTACAG 6029726 Query 59846 GCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCAT 59905 ||| | |||||| | |||| || |||||| | ||| ||||| || || Sbjct 6029725 TCTCCTCCTCGATACTTACATCAAAGACAACAAAGAGAGAGACCATCTCTTCCGCGCGAT 6029666 Query 59906 AGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT 59963 || || |||| || || | ||||| | ||||| ||| | ||||| || Sbjct 6029665 TGAAACCATCCCTTGC-GTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAA---- 6029611 Query 59964 GGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTT 60019 ||| | ||| || || |||| |||||||||| || ||||| ||||| |||||||| Sbjct 6029610 GGATC-TCAGACCTTCGCTGAACGAATCATAGCTTTCGCTTGCGTCGAAGGTATCTTCTT 6029552 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 ||| || ||||| | || |||||||| || || || || |||||||| ||||| | Sbjct 6029551 CTCCGGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGCCTTAC 6029492 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GC 60138 |||||| ||||| ||||| || || ||||| || || || || || || ||| | | Sbjct 6029491 TTTCTCAAACGAACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGC-GTGCCTTC 6029433 Query 60139 TCTATTCACACCTATTGGAAAA--ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTG 60196 |||| | | ||| || | | || | | || || ||| | | ||| Sbjct 6029432 TCTACACGCTCCT----CAACACGAAGCTCAGCGAA-GAGCGCGTGAAGTCTATCGTGTG 6029378 Query 60197 GG--CTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGG 60253 | ||| || | ||||| ||||| | || |||||||| ||| | | || Sbjct 6029377 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGG 6029318 Query 60254 TATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCA 60313 ||| || || |||| ||||| ||| ||||||| ||||| | || ||| Sbjct 6029317 GATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGC 6029258 Query 60314 GTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTC 60373 | |||| | || | ||||| |||| ||||||||| || |||||||| ||||| Sbjct 6029257 GCTTGGCTACGGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTATCTC 6029198 Query 60374 GTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | | |||||||||| |||||||| ||||| || || || ||||| Sbjct 6029197 GCTTCAAGGGAAGACTAACTTCTTCGAGAAACGCGTTGGCGATTA 6029153 >seq9 Length=38094978 Score = 129 bits (142), Expect = 6e-25 Identities = 500/765 (65%), Gaps = 32/765 (4%) Strand=Plus/Minus Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 ||||| ||| ||| | || |||||||| ||||| ||||||||||| ||| || Sbjct 5074285 CTCAACGACGGCGAACGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCGTCAGAC 5074226 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAG 59786 ||||| ||| | || ||| | | | | |||| | | |||||||| | | ||| Sbjct 5074225 GGAATCGTGTTAGAGAATCTCGC--TTCCCGTTTC-ATGTCCGATGTCCAAGTCTCGGAG 5074169 Query 59787 GCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTC 59845 || || | ||||||| | ||| ||| | ||| |||||||||||||| |||| Sbjct 5074168 GCGCGTGCTTTCTACGGATTCCAGATCGCG-ATTGAGAATATCCACTCCGAGATGTACAG 5074110 Query 59846 GCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCAT 59905 ||| | |||||| | |||| || |||||| | ||| ||||| || || Sbjct 5074109 TCTCCTCCTCGATACTTACATCAAAGACAATAAAGAGAGAGACCATCTCTTCCGCGCGAT 5074050 Query 59906 AGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTG 59964 || || |||| || || | ||||| | ||||| ||| ||||| | | | Sbjct 5074049 TGAAACCATCCCTTGC-GTCGCGAAGAAAGCCCAGTGGGCTATGACATGGATC-GAC--G 5073994 Query 59965 GAGC---ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCT 60021 || | | | || || |||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 5073993 GATCTCAAACCTTCGCTGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCT 5073934 Query 60022 CTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTT 60081 | || ||||| | || |||||||| || || || || |||||||| ||||| | || Sbjct 5073933 CCGGAAGCTTCTGCTCAATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGCCTTACTT 5073874 Query 60082 TCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTC 60140 |||| ||||| ||||| || || ||||| || || || || || || || | ||| Sbjct 5073873 TCTCAAACGAACTGATCTCGCGTGACGAAGGTCTACACTGCGACTTCGC-TTGCCTTCTC 5073815 Query 60141 TATTCACACCTATTGGAAAA--ATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGG 60198 || | | ||| || | | || | || || ||| | | || ||| | Sbjct 5073814 TACACGCTCCT----CAACACGAAGCTGAGCGAA-GAGCGCGTGAAG-TCGATC-GTGTG 5073762 Query 60199 C----TTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGG 60253 | ||| || | ||||| ||||| | || |||||||||||| | | || Sbjct 5073761 CGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCATGCGCGTTGGTTGG 5073702 Query 60254 TATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCA 60313 ||| || || |||| ||||| ||| ||||||| ||||| | || ||| Sbjct 5073701 GATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTAGCGGATAGGCTTTTGGGTGC 5073642 Query 60314 GTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTC 60373 | |||| | || | ||||| |||| ||||||||| || |||||||| ||||| Sbjct 5073641 GCTTGGGTACGGGAAGGTGTACGGTGTGAGTAACCCTTTTGATTGGATGGAACTTATCTC 5073582 Query 60374 GTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | | |||||||||| |||||||| ||||| || || || ||||| Sbjct 5073581 GCTTCAAGGGAAGACTAACTTCTTCGAGAAACGCGTTGGCGATTA 5073537 >seq3333 Length=714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 60331 TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCA 60390 ||||||| |||| ||| ||||| || |||||||| |||||| | |||||||||| | Sbjct 668 TTTACGGTGTGAGTAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACTA 609 Query 60391 ACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||| || ||||| ||||| Sbjct 608 ACTTCTTTGAGAAACGCGTCGGCGATTA 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548269653689280