Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq36 571 7e-158 seq16 571 7e-158 seq18 489 2e-133 >seq36 Length=171746 Score = 571 bits (632), Expect = 7e-158 Identities = 699/954 (73%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||| ||||| | ||||| || | | || || | | || Sbjct 56590 TTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTT 56531 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 56530 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 56471 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || || || || | | || | || | Sbjct 56470 CTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAG 56411 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || ||||| ||||||||||| ||| | ||||| |||||||| |||| Sbjct 56410 CTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 56351 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 56350 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 56291 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 56290 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 56231 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || |||| || |||||| | |||||||| | ||||| ||| || Sbjct 56230 CAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTT 56171 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 56170 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 56111 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 56110 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 56051 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | || |||||| | | || || || | Sbjct 56050 GCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 55991 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 55990 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACA 55931 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | |||||||| |||||| |||||| || | Sbjct 55930 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATT 55871 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 55870 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 55811 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || | || ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 55810 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 55751 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 55750 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 55691 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 55690 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 55637 >seq16 Length=29110212 Score = 571 bits (632), Expect = 7e-158 Identities = 699/954 (73%), Gaps = 0/954 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||| ||||| | ||||| || | | || || | | || Sbjct 16535164 TTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTT 16535223 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 16535224 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 16535283 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || || || || | | || | || | Sbjct 16535284 CTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAG 16535343 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || ||||| ||||||||||| ||| | ||||| |||||||| |||| Sbjct 16535344 CTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 16535403 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 16535404 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 16535463 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 16535464 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 16535523 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || |||| || |||||| | |||||||| | ||||| ||| || Sbjct 16535524 CAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTT 16535583 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 16535584 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 16535643 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 16535644 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 16535703 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | || |||||| | | || || || | Sbjct 16535704 GCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 16535763 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 16535764 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACA 16535823 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | |||||||| |||||| |||||| || | Sbjct 16535824 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATT 16535883 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 16535884 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 16535943 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || | || ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 16535944 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 16536003 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 16536004 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 16536063 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 16536064 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 16536117 Score = 86.0 bits (94), Expect = 8e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 177041 TTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 26298428 TTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 26298487 >seq18 Length=20869551 Score = 489 bits (542), Expect = 2e-133 Identities = 556/746 (75%), Gaps = 0/746 (0%) Strand=Plus/Minus Query 176355 GGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATT 176414 |||||| ||| | ||||| |||||||| |||| || || || || |||| |||| | Sbjct 2057535 GGAAGCTGCATCCGTTGATGAATGGCTACACAACGGTGGTCCTTATGAACTAATTGTTCT 2057476 Query 176415 CCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACT 176474 ||||| | | ||| | | ||| ||||| || | ||||||||||||| | | || Sbjct 2057475 ACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2057416 Query 176475 AGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGT 176534 || |||||||||||||| ||||||||| || || || || | | |||| || || Sbjct 2057415 GGGTATGCGTCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCGACTGCTGT 2057356 Query 176535 TTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTC 176594 |||| | |||||||| | ||||| ||| ||| ||||||||||||||||| || || || Sbjct 2057355 TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 2057296 Query 176595 AGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 ||||| |||||||||||| |||||||||| || |||||||||||||| ||||||||||| Sbjct 2057295 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 2057236 Query 176655 CCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAG 176714 || ||| | || ||||| ||||| || || || || || || || ||||| || Sbjct 2057235 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 2057176 Query 176715 TCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTA 176774 | || |||||| | | || || || || ||||| ||||| || | ||||| Sbjct 2057175 CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 2057116 Query 176775 CAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCG 176834 || |||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| || Sbjct 2057115 CAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 2057056 Query 176835 TCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC 176894 | |||||||| |||||| |||||| || || | | | || |||||| | || || Sbjct 2057055 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 2056996 Query 176895 ATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCT 176954 | || || || | || ||||||||||| | ||| || | || ||||| |||||||| Sbjct 2056995 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 2056936 Query 176955 TAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATG 177014 || |||||||| |||||||| || || | || | || || ||| ||| || Sbjct 2056935 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 2056876 Query 177015 GGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCA 177074 || ||||| |||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 2056875 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 2056816 Query 177075 CAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||| || ||||| ||||||| Sbjct 2056815 CAACTTCCCTCTAGACCTAGCTGCTG 2056790 Score = 264 bits (292), Expect = 1e-65 Identities = 277/364 (76%), Gaps = 0/364 (0%) Strand=Plus/Minus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| ||||| || | ||||||| |||||| ||||||||||| Sbjct 2056508 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAA 2056449 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || ||||||||||||||||| |||||||| ||||| || | |||||||| |||||| | Sbjct 2056448 ACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 2056389 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| || || | | | || |||||| | || || | || || || | || ||| Sbjct 2056388 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 2056329 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 |||||||| | ||| || | || ||||| |||||||| || |||||||| |||||||| Sbjct 2056328 TTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 2056269 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 || || | || | || || ||| ||| |||| ||||| |||||||||| Sbjct 2056268 TCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 2056209 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 ||||||||||||||||||||||| || |||||||||||||||||||| || ||||| ||| Sbjct 2056208 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 2056149 Query 177097 GCTG 177100 |||| Sbjct 2056148 GCTG 2056145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603213684579840