Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 3e-15 seq1 96.9 3e-15 seq11 95.1 1e-14 seq15 91.5 1e-13 seq10 89.7 4e-13 seq12 86.0 5e-12 >seq19 Length=26736940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || |||||||||||||| || ||| || || |||||||| ||| || |||| Sbjct 22319626 TACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGA 22319685 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || |||||| Sbjct 22319686 GCGAGCATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGTCCCATG 22319745 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| ||||| Sbjct 22319746 TCTGCTGAACGCTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACTG 22319801 >seq1 Length=23241285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || |||||||||||||| || ||| || || |||||||| ||| || |||| Sbjct 16357666 TACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGTGA 16357607 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || |||||| Sbjct 16357606 GCGAGCATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGGCCCATG 16357547 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| ||||| Sbjct 16357546 TCTGCTGAACGCTGATACATTTGACAGGAGAGTTCCCCATCTGCCACATAGAACTG 16357491 >seq11 Length=49703607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 3083192 TTAAACGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 3083133 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||||||||||||||| | ||||| |||||||| || |||| | |||| Sbjct 3083132 CCATTTGCAACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGA 3083073 Query 118705 TGGGCAGGATTCCAGGC 118721 | | ||||||||| || Sbjct 3083072 TCAGGAGGATTCCAAGC 3083056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 3083756 TTAAACGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 3083697 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||||||||||||||| | ||||| |||||||| || |||| | |||| Sbjct 3083696 CCATTTGCAACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGA 3083637 Query 118705 TGGGCAGGATTCCAGGC 118721 | | ||||||||| || Sbjct 3083636 TCAGGAGGATTCCAAGC 3083620 >seq15 Length=30521352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || |||||||||||||| || ||| || || |||||||| ||| || | || Sbjct 24339613 TACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACAAGATTGCACACGCGA 24339672 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || |||||| Sbjct 24339673 GCGAGCATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAAGGGCACACCAAGGCCCATG 24339732 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACT 118663 |||||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| |||| Sbjct 24339733 TCTGCTGAACGCTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACT 24339787 >seq10 Length=25316904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || |||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 2742410 TTAAACGGTACACGGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 2742351 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACT-CAG 118703 || ||||||||||||||||| | ||||| |||||||| || |||| |||| ||| Sbjct 2742350 CCATTTGCAACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCAT-CAACTCCAG 2742292 Query 118704 TTGGGCAGGATTCCAGGC 118721 | | ||||||||| || Sbjct 2742291 ATCAGGAGGATTCCAAGC 2742274 >seq12 Length=33044737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| || ||||| || ||||| | ||| |||| ||| || || || || Sbjct 2862632 TTAAACGGTACACCGAGCCCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 2862573 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || ||||||||||||||||| | |||| |||||||| || |||| | |||| Sbjct 2862572 CCATTTGCAACATAAAACTGTGCAAACATGTCGCATGGAGGAAGTGCCATCAACTTCAGA 2862513 Query 118705 TGGGCAGGATTCCAGGC 118721 | | ||||||||| || Sbjct 2862512 TCAGGAGGATTCCAAGC 2862496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414288825963568