Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq20 104 2e-17 seq13 98.7 7e-16 seq14 87.8 1e-12 seq3 87.8 1e-12 >seq8 Length=27720346 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||||| || || || ||||| |||| || || ||| | Sbjct 20846901 ATGCAAATCTTCGTGAAGACTCTCACCGGAAAGACCATTACCCTTGAAGTGGAGAGCTCT 20846960 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| |||||| |||| ||| | Sbjct 20846961 GACACCATCGACAAC--GTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACC 20847018 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||| || ||||| || | |||| |||| ||||||||| Sbjct 20847019 AGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCCGATTACA 20847078 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 20847079 ACATCCAGAAGGAGTCGACCCTTCACTTGGTATTGCGTCTCCGTGGAGG 20847127 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| || Sbjct 6053082 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCC 6053023 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||| ||||| |||| ||| | Sbjct 6053022 GACACCATCGACAAT--GTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCTCCGGATC 6052965 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || |||||||| ||||| | || || | |||| |||| | ||||||| Sbjct 6052964 AGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCTGATTACA 6052905 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| ||||| || | || |||||| | ||||| Sbjct 6052904 ACATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTT 6052865 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || ||||| | || || || ||| | Sbjct 26612306 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 26612365 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| ||||| |||| ||| | Sbjct 26612366 GACACCATCGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 26612423 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || ||||| ||||| | || || | || | |||| | ||||||| Sbjct 26612424 AGCAGAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACA 26612483 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | || |||||| | |||||| | || || Sbjct 26612484 ACATTCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 26612532 >seq20 Length=30099736 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| | Sbjct 11037089 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 11037030 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| |||||| |||| ||| | Sbjct 11037029 GACACCATCGACAAT--GTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATC 11036972 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || |||||||| ||||| | || || | |||| |||| | ||||||| Sbjct 11036971 AGCAAAGATTGATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCTGATTACA 11036912 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| || ||||| || | || |||||| | ||||| Sbjct 11036911 ACATTCAGAAAGAATCAACACTCCACTTGGTTCTCCGTTT 11036872 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || ||||| | || || || ||| | Sbjct 14739434 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 14739493 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 14739494 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATC 14739551 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || ||||| || ||||| | || || | || | |||| | ||||||| Sbjct 14739552 AGCAAAGATTGATCTTTGCTGGTAAACAGCTAGAGGATGGTCGTACCTTGGCAGATTACA 14739611 Query 27968 ACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| ||||| | ||||| || |||||| | ||||| Sbjct 14739612 ACATCCAGAAAGAATCAACACTT--CACTTGGTTCTTCGTTT 14739651 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || | || || || ||| | Sbjct 1019869 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 1019810 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| |||||| |||| ||| | Sbjct 1019809 GACACCATCGACAAT--GTCAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGACC 1019752 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || ||||| ||||| | || || | || | |||| | ||||||| Sbjct 1019751 AGCAGAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGATTACA 1019692 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || | || |||||| | |||||| | || || Sbjct 1019691 ACATTCAGAAGGAGTCGACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 1019643 >seq13 Length=24101694 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || || || |||| ||||| ||| || Sbjct 9157675 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACCCTTGAGGTCGAGAGCTCC 9157616 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 9157615 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATC 9157558 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || ||||| ||||| | || || | |||| |||| | ||||||| Sbjct 9157557 AGCAAAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACCTTGGCTGATTACA 9157498 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| || ||||| || | || |||||| | ||||| Sbjct 9157497 ACATTCAGAAAGAATCAACCCTCCACTTGGTTCTCCGTTT 9157458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||||| || ||||| || || | || || || ||| | Sbjct 21466444 ATGCAAATCTTCGTGAAGACTCTCACCGGGAAGACAATCACTTTGGAGGTGGAGAGCTCT 21466503 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || ||||| || ||| | || ||| | Sbjct 21466504 GACACCATCGACAAC--GTGAAAGCCAAGATCCAAGACAAGGAGGGTATCCCACCGGACC 21466561 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || ||||| || | || | |||| | ||||||| Sbjct 21466562 AGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCTTGGCGGATTACA 21466621 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 21466622 ACATCCAGAAGGAGTCAACCCTTCACTTGGTATTGCGTCTTCGTGGTGG 21466670 >seq14 Length=31758599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 |||||||| || ||||||||||| || || ||||| || ||| | || || || | Sbjct 11737615 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAGTCA 11737674 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||||| ||||| || ||| || || ||||| ||||| | || || Sbjct 11737675 TCAGACACGATCGACAAT--GTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGG 11737732 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | ||||| || | || |||||||| ||||| |||| |||| | | ||| | ||||| Sbjct 11737733 ATCAGCAGCGTCTGATCTTTGCCGGGAAACAGCTGGAAGACGGGAGAACGCTAG-CCGAT 11737791 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||||| || | |||||||| ||||| || | || || Sbjct 11737792 TACAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTGCGTCTGAGGGGAGG 11737844 >seq3 Length=28500605 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 |||||||| || ||||||||||| || || ||||| || ||| | || || || | Sbjct 10831699 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAGTCA 10831758 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||||| ||||| || ||| || || ||||| ||||| | || || Sbjct 10831759 TCAGACACGATCGACAAT--GTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGG 10831816 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | ||||| || | || |||||||| ||||| |||| |||| | | ||| | ||||| Sbjct 10831817 ATCAGCAGCGTCTGATCTTTGCCGGGAAACAGCTGGAAGACGGGAGAACGCTAG-CCGAT 10831875 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||||| || | |||||||| ||||| || | || || Sbjct 10831876 TACAACATCCAGAAAGAGTCGACGCTTCATTTGGTGCTGCGTCTGAGGGGAGG 10831928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355701008839524