Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq14 114 1e-20 seq3 114 1e-20 seq17 109 5e-19 seq8 100 2e-16 seq11 98.7 9e-16 seq20 95.1 1e-14 seq13 95.1 1e-14 seq5 87.8 2e-12 seq12 84.2 2e-11 >seq14 Length=31758599 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||||||| ||||| |||||| || || || |||||||| Sbjct 11737844 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 11737785 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || |||| |||| || |||||||| || ||||| || ||||||||||| | ||||||| Sbjct 11737784 AGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGGG 11737725 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| ||| ||| | | | | ||| || ||||| || Sbjct 11737724 ATCCCT-TCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAAC 11737666 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 11737665 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 11737614 >seq3 Length=28500605 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||||||| ||||| |||||| || || || |||||||| Sbjct 10831928 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGCT 10831869 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || |||| |||| || |||||||| || ||||| || ||||||||||| | ||||||| Sbjct 10831868 AGCGTTCTCCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGACGCTGCTGATCCGGTGGG 10831809 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| ||| ||| | | | | ||| || ||||| || Sbjct 10831808 ATCCCT-TCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAAC 10831750 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 10831749 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 10831698 >seq17 Length=35492130 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||||||| ||||| ||| || || || || |||||||| Sbjct 11454643 CCTCCCCTCAGACGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 11454584 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||||| |||| || |||||||| || || || || ||||||||||| | ||||||| Sbjct 11454583 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGGG 11454524 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| ||| ||| | | | | ||| || ||||| || Sbjct 11454523 ATCCCT-TCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCAAC 11454465 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 11454464 CTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 11454413 >seq8 Length=27720346 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| |||||| || ||||| ||||| || Sbjct 6052400 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCC 6052459 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || || ||||| || || ||||| ||||| | |||||| || |||||| Sbjct 6052460 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6052519 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| || ||| || ||||| | | | ||||| |||| || Sbjct 6052520 -ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTC---TC 6052575 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| || || || || ||||||||||||||||| Sbjct 6052576 AACCTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 6052626 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | |||||| || || || |||||| || ||||| || || || Sbjct 8687919 CCACCTCTGAGACGAAGCACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCAGCT 8687860 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || |||||||| || || ||||| ||||| | ||||||||| | || Sbjct 8687859 AGCGTGCGACCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGA 8687800 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGA---CTC 39233 | | ||||| ||| ||| | | | || | | | | || ||||| ||| ||| Sbjct 8687799 ATCCCTTCTTTATCC-TGAATCTTAGCTTTAACATTGTCAATAGTATC---CGAACTCTC 8687744 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || |||| ||| || |||||||||||||| Sbjct 8687743 AACCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATTTGCAT 8687693 >seq11 Length=49703607 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || | | ||||| ||||| || ||| || || || Sbjct 21796006 AAATATTTGCATGCCACCTCTCAACCTAAGAACCAAGTGTAGTGTTGACTCCTTCTGGAT 21796065 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| ||||||||||| || || | || ||||||||||| || ||||| ||||| | ||| Sbjct 21796066 ATTGTAATCGGCAAGCGTACGACCATCCTCAAGCTGTTTACCGGCAAAGATAAGTCTCTG 21796125 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223 |||||| | || | || || ||||| ||| || |||| ||| | | | ||| | Sbjct 21796126 CTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGT 21796184 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || || || || | || || | || || || || || |||||||||||||||| Sbjct 21796185 CGGAGCTTTCAACCTCAAGGGTTATGGTCTTACCAGTAAGAGTCTTAACAAAGATTTGCA 21796244 Query 39284 T 39284 | Sbjct 21796245 T 21796245 >seq20 Length=30099736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || |||||| || ||||| ||||| || Sbjct 11036407 CCACCTCTCAGACGAAGCACCAAATGGAGAGTCGACTCTTTCTGGATATTGTAATCAGCC 11036466 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || || ||||| || || ||||| ||||| | ||| ||||| |||||| Sbjct 11036467 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGTGGG 11036526 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| || ||| || ||||| | | | ||||| |||| || Sbjct 11036527 -ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTC---TC 11036582 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| || || || || ||||||||||||||||| Sbjct 11036583 AACCTCCAAAGTGATGGTTTTACCGGTGAGAGTCTTAACAAAGATTTGCAT 11036633 >seq13 Length=24101694 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| |||||| || ||||| ||||| || Sbjct 9156993 CCACCTCTCAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCC 9157052 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || || ||||| || || ||||| ||||| | ||||||||| |||||| Sbjct 9157053 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 9157112 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| || ||| || ||||| | | | ||||| |||| || Sbjct 9157113 -ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTC---TC 9157168 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || || || || || |||||||||||||| Sbjct 9157169 AACCTCTAGGGTGATTGTTTTACCGGTGAGAGTCTTCACAAAGATTTGCAT 9157219 >seq5 Length=34971402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||| | ||| ||||| || || || || || || ||||| || || ||| || Sbjct 34224698 CGTAGCACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCG 34224639 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || ||||| || || || || || | ||||||||||| ||||||| | || || || Sbjct 34224638 TCTTCTAGCTGCTTCCCGGCGAAAATCAAACGCTGCTGGTCCGGTGGGATCCCT-TCCTT 34224580 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| ||| ||| | | | | || ||| ||||| || || | || || Sbjct 34224579 GTCTTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGATGACTCAACCTCTAGGGTTAT 34224520 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || ||||| || ||||| || ||||| ||||||||| Sbjct 34224519 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 34224480 >seq12 Length=33044737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || | | ||||| || || || ||| ||||| || Sbjct 24358124 AAATATTTGCATGCCACCTCTCAACCTAAGAACCAAGTGGAGTGTTGACTCCTTTTGGAT 24358183 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| ||||| ||||| || || | || ||||||||||| || ||||| ||||| | ||| Sbjct 24358184 ATTGTAATCAGCAAGCGTACGACCATCCTCAAGCTGTTTACCGGCAAAGATAAGTCTCTG 24358243 Query 39165 CTGGTC 39170 |||||| Sbjct 24358244 CTGGTC 24358249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429350791942556