Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq12 86.0 5e-12 >seq12 Length=33044737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||||||||| | ||| | ||||| || ||||| ||| |||||||| ||||| ||||| Sbjct 2862675 GACGTGAGCGAGAATGCATGTGAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCGAG 2862616 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 |||||| || | || | ||| || | ||||| || || ||||||| || ||||| Sbjct 2862615 CCCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2862556 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || || ||| |||||||| ||||| | || || || ||||| Sbjct 2862555 CTGTGCAAACAT---GTCGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGATTCCA 2862499 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| ||||| || | || || || || ||| |||| Sbjct 2862498 AGCCGACATTATGATTCGTCGATCATCAGGATTATTCTTGAT 2862457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369339620632772