Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 129 8e-25 seq16 123 4e-23 seq7 120 4e-22 seq11 86.0 9e-12 seq10 86.0 9e-12 >seq9 Length=38094978 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 32305347 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 32305288 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||||||||||||| ||||||||||||| ||| || Sbjct 32305287 TTAGATGTTCCATTTGTGCCACGAATATAACTTCCAGTTGCACGAATATTATGAATTGAA 32305228 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 32305227 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTTTCATATATG 32305168 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||| ||||| Sbjct 32305167 CCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 32305127 Score = 107 bits (118), Expect = 3e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||||||||||||||||||||||||| | | ||| | | || | Sbjct 32305006 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 32304947 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 32304946 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 32304888 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | ||| || | ||||||| | || | Sbjct 32304887 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAG 32304828 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||||||| ||||| | | |||| ||| || Sbjct 32304827 AGTTTTAAATCCAAAGAAATCGTATTCAAAATC 32304795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || || | ||||||||| | ||||| ||| ||||||| Sbjct 32305794 CTCTCTTTCATACTTCGTGTACAGTGTCTCAAATTCAGCGCCCCAGCAATCTGCCAAACC 32305735 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||| || ||||| | || |||||||| ||||| || |||| | ||| || Sbjct 32305734 CGGAGCTTCGTTTGGACAAAACAGTGACCACTTCCCATCGCTCTGGACCCTCTCCATGAA 32305675 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||| || ||||| |||||| ||| | |||| | || ||||||| Sbjct 32305674 GAGATCTGGAATCCAGAGAGCATAAAACAAGTCTCTAGCCCTGTGTTCTTC 32305624 >seq16 Length=29110212 Score = 123 bits (136), Expect = 4e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 22277659 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 22277600 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| ||||||||||||| ||| || Sbjct 22277599 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAATTGAA 22277540 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 22277539 ACACCAATACCCCCAGCTGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 22277480 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||| ||||| Sbjct 22277479 CCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 22277439 Score = 107 bits (118), Expect = 3e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||||||||||||||||||||||||| | | ||| | | || | Sbjct 22277320 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 22277261 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 22277260 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 22277202 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | ||| || | ||||||| | || | Sbjct 22277201 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTTTTAAGAGGTATGATCTCTCAAG 22277142 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||||||| ||||| | | |||| ||| || Sbjct 22277141 AGTTTTAAATCCAAAGAAATCGTATTCAAAATC 22277109 >seq7 Length=33617777 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 26389525 CCTCCTTGATCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 26389466 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| |||||||||||| ||| || Sbjct 26389465 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTGTGAATTGAA 26389406 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 26389405 ACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 26389346 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||| ||||| Sbjct 26389345 CCGTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 26389305 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||||||||||||||||||||||||| | | ||| | | || | Sbjct 26389186 GTTCCTGCATTGAAGAGTGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATGG 26389127 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| || | | || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 26389126 TAAGTTTGGATCGCGGAATCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 26389068 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | | | || | ||||||| | || | Sbjct 26389067 CATGTGTTGAGGCCTTTCAACAACTTTCCCTTCGACTCTTAAGAGGTATGATCTCTCAAG 26389008 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||||||| ||||| | | |||| ||| || Sbjct 26389007 AGTTTTAAATCCAAAGAAATCGTATTCAAAATC 26388975 >seq11 Length=49703607 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | ||||| || |||||| ||||| | | |||||||||| || | Sbjct 648619 CAAGACTCTACGACTATAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 648560 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||| || ||||||||||| ||||| |||||||| | | | |||||||| |||| Sbjct 648559 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATT 648500 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || || |||| | ||| ||| ||||| |||| || || | |||| ||| Sbjct 648499 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGATCGGAAGGAATTACATTCCA 648440 Query 75916 GAGATCGTATTGTAGAATTCCGTTGCTAGCATAT 75949 | || ||| |||||||| || ||| |||| Sbjct 648439 CATGTCAGGTTGAAGAATTCC-CTGGTAGTATAT 648407 >seq10 Length=25316904 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | ||||| || |||||| ||||| | | |||||||||| || | Sbjct 544021 CAAGACTCTACGACTATAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 543962 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||| || ||||||||||| ||||| |||||||| | | | |||||||| |||| Sbjct 543961 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCATT 543902 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || || |||| | ||| ||| ||||| |||| || || | |||| ||| Sbjct 543901 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATTACATTCCA 543842 Query 75916 GAGATCGTATTGTAGAATTCCGTTGCTAGCATAT 75949 | || ||| |||||||| || ||| |||| Sbjct 543841 CATGTCAGGTTGAAGAATTCC-CTGATAGTATAT 543809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712602778563840