Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq12 84.2 2e-11 >seq12 Length=33044737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | ||||| ||||||||||| | ||| ||| | Sbjct 24358135 ATGCAAATATTTGTGAAAACCCTCACCGGAAAAACCATTACTCTAGAAGTTGAAAGCTCT 24358076 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || ||| ||||| ||||| | || || ||| Sbjct 24358075 GACACCATTGACAATGTCAAGGCGAAGATTCAAGACAAGGAAGGGATACCTCCTGACCAA 24358016 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || ||||| | || ||||| ||| | || ||| | ||| | || |||||||| Sbjct 24358015 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCTTAGCAGATTATAAC 24357956 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || ||||| || | |||||| | ||||||| Sbjct 24357955 ATCCAGAAAGAGTCAACTCTGCATTTGGTTCTTCGTCTGAGAGGTGGCA 24357907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421619899657312