Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4112 104 5e-17 seq4712 100 6e-16 seq544 100 6e-16 seq3641 98.7 2e-15 seq3028 98.7 2e-15 seq2643 98.7 2e-15 seq735 98.7 2e-15 seq592 98.7 2e-15 seq533 98.7 2e-15 seq4711 95.1 3e-14 seq8279 86.0 1e-11 >seq4112 Length=35488 Score = 104 bits (114), Expect = 5e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 165699 TTAAAAC-GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTC 165757 ||||||| || |||||||||||||||| |||||||||| || || |||| || |||||| Sbjct 27213 TTAAAACAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTC 27154 Query 165758 GTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||| ||||| Sbjct 27153 GTGGGTTCGAGCCCCACGGTGGGC 27130 >seq4712 Length=28841 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 694 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 635 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 634 CCCCACGGTGGGC 622 >seq544 Length=215698 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 22024 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22083 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 22084 CCCCACGGTGGGC 22096 >seq3641 Length=41612 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12453 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12512 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12513 CCCACGGTGGGC 12524 >seq3028 Length=52452 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5147 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5206 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5207 CCCACGGTGGGC 5218 >seq2643 Length=61607 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 39494 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39553 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39554 CCCACGGTGGGC 39565 >seq735 Length=181087 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 58164 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 58105 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 58104 CCCACGGTGGGC 58093 >seq592 Length=206781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 133948 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 133889 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 133888 CCCACGGTGGGC 133877 >seq533 Length=217702 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 77172 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 77113 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 77112 CCCACGGTGGGC 77101 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 81449 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 81390 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 81389 CCCACGGTGGGC 81378 >seq4711 Length=28868 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 21185 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21244 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 21245 CCCACTGTGGGC 21256 >seq8279 Length=9783 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGT-AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||| ||||||| || || |||| || ||||||||||||||||| Sbjct 1384 GCCCGTCTAGCTCAGTTGGTTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1443 Query 165769 CCC-CACGATGGGC 165781 ||| |||| ||||| Sbjct 1444 CCCACACGGTGGGC 1457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057673422059300