Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1831 116 4e-21 >seq1831 Length=90912 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||||| ||| || | ||| |||||||| || |||||||| | ||| | || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 54485 -TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||||||| |||||| || || | |||| || |||||||| || || || | ||| || Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||||||||||| || ||| | || |||| | ||| || | || | Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTGTACCTTCAAGAGGTATGACCTCTCGAG 16332 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||| |||||||| | || ||| ||||| || || || || Sbjct 16333 GGTTTTAAAGCCAAAATAATCATAGTCAAAATCTCGATCATATATTAT 16380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593639146912800