Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3427 87.8 2e-12 >seq3427 Length=45480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || || | || || || ||||||||| || ||| | | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCG 42448 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| || || ||||| | || ||| || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||||||||| || || ||| |||||||| || ||| | || |||||||| Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || || ||||| || || ||||| ||||| Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGTG 42298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||| || || |||||||||||||| || || ||||| || Sbjct 42641 GATAAGGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAG 42582 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| |||| |||||||| ||||||||||| || || ||||| Sbjct 42581 GATGGAAGGACTTTGGCTGATTACAACATTCAGAAGGAGTCCACACTTCA 42532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || ||||| || | || ||| || |||||||||||||| || || || Sbjct 42195 AAAATTCAGGACAAAGAGGGCATCCCACCAGACCAGCAAAGACTTATCTTCGCCGGTAAG 42136 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | || | || |||||||| || |||||||| |||||||||||| Sbjct 42135 CAACTCGAGGATGGAAGGACACTTGCAGATTACAACATCCAGAAGGAGTCTACTCTTCAC 42076 Query 29166 ATGGTGTTACG 29176 | ||||| || Sbjct 42075 CTCGTGTTGCG 42065 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||| || | || ||||| || || ||| |||||||| | ||| |||| || Sbjct 42849 AGATCAACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGA 42790 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 |||||||||||||||||| || || |||||| | ||| | || || Sbjct 42789 TTACAATATTCAGAAGGAGTCAACCCTTCACCTCGTGCTGCGTTT 42745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428278001967050