Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2770 125 7e-24 seq3427 109 6e-19 seq2223 109 6e-19 >seq2770 Length=58540 Score = 125 bits (138), Expect = 7e-24 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || || |||||| |||| || || | | Sbjct 46591 ATGCAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCA 46650 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || || ||| ||||||| Sbjct 46651 GACACAATCGACAACGTT-AAGGCCAAGATTCAGGACAAGGAAGGAATTCCC-CGGACCA 46708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| || || ||| |||| |||| |||||||| |||||||| Sbjct 46709 GCAACGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAA 46768 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || ||||| | ||| |||| |||||||| || Sbjct 46769 CATTCAGAAGGAGTCGACTCTGCACTTGGTGCTGCGTTTGAGGGGTGG 46816 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || |||||| |||| |||||| | || Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||| || | |||||||| || |||||| ||||||| Sbjct 46195 GACACCATCGACAACG-TCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCA 46253 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| || || || || || |||| || || || ||| ||||| Sbjct 46254 GCAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAA 46313 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 46314 CATCCAGAAGGAATCCACCCTCCA 46337 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||||||||| || || ||||| ||||||||| |||| ||||| | Sbjct 45676 AATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGC 45735 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | || || || || || ||| |||| Sbjct 45736 TCTGACACCATCGACAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGA 45794 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | | |||| || || || ||||| || |||| || |||||| ||| || Sbjct 45795 TCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTA 45854 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| |||||||| |||| || ||| | ||| Sbjct 45855 CAACATTCAGAAGGAATCCACCCTTCATTTGGTG 45888 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| |||||| | || Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | || || | |||||||| || |||||| | ||||| Sbjct 45967 GACACCATCGACAACG-TCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCA 46025 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || || || || |||| || || ||| ||| ||||| Sbjct 46026 GCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAA 46085 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 46086 CATCCAGAAGGAATCCACACTCCA 46109 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||||||||||||||| | || || || | | Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| ||||| | ||||| || |||||||| | |||||| Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 46937 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||||| || || |||| || | || || || || |||||| Sbjct 46938 CAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAAC 46997 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || || || || Sbjct 46998 ATTCAGAAGGAGTCTACCCTCCACCTTGT 47026 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| ||||| | || || ||||| || ||| | || ||||| || || || Sbjct 46435 AACG-TCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTAAT 46493 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || ||||| || || |||| || ||||| ||| ||||||||||||||||| Sbjct 46494 CTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAACATCCAGAAGGA 46553 Query 40881 GGCCACGCTGCA 40892 | | || || || Sbjct 46554 GTCGACTCTCCA 46565 >seq3427 Length=45480 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || |||||||| | || || ||| | | Sbjct 42279 ATGCAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCG 42220 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| ||||||||||||||||| | |||||| Sbjct 42219 GATACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACCAG 42160 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| ||| || || || || || || | | || || || |||||| Sbjct 42159 CAAAGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAAC 42100 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || || || |||||||| ||||||| ||| Sbjct 42099 ATCCAGAAGGAGTCTACTCTTCACCTCGTGTTGCGTCTGAGGGGTGGC 42052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || || || ||||| ||| | || || ||| | | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCG 42448 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| ||||| || || ||||| | |||||| Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| || || || || |||| || | | || | || |||||| Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| |||||| | || || ||| | ||| |||| ||||||| ||| Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGGC 42280 >seq2223 Length=74567 Score = 109 bits (120), Expect = 6e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 || || |||||| || ||||| ||||| || || || || || || ||| | || || || Sbjct 64060 CCTAACAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGA 64119 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | |||| | | | | |||||| || || | ||||| || ||||||| | | Sbjct 64120 GTCTTCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCAC-C 64178 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 ||||||||||| ||||||| ||| || || ||||| || |||| || ||||| ||| Sbjct 64179 AGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGA 64238 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||||| | || || || Sbjct 64239 TTACAACATCCAAAAGGAGTCGACTCTTCA 64268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515147648933600