Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3427 123 4e-23 >seq3427 Length=45480 Score = 123 bits (136), Expect = 4e-23 Identities = 166/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || ||||| || || || || | ||| | ||| Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCG 42448 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| |||| |||||||||||| || ||||| || ||||| || || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||| ||||| || || ||||| || ||| | | || |||| ||||| || Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | |||||||| | ||| | | ||||| || Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGGCAT 42278 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| || ||||| || || || ||| | ||| |||| Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || |||||||| |||||||| ||||| || || Sbjct 42675 TGATACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCA 42616 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| ||||| || || ||| | |||||| | | || || | ||||| || Sbjct 42615 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAA 42556 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | ||| | || | ||| | || || ||||| Sbjct 42555 CATTCAGAAGGAGTCCACACTTCATCTCGTGCTTCGTCTTCGTGGCGGTAT 42505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755351086048000