Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2770 132 4e-26 seq2223 113 4e-20 seq3427 100 2e-16 >seq2770 Length=58540 Score = 132 bits (146), Expect = 4e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | || | || ||||||||| | || ||||| || ||||||||||| || Sbjct 46818 TACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 46759 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||| | ||| ||||||||| | || ||||| ||||| || || | Sbjct 46758 CAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-G 46700 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || ||||| | |||| ||||| | |||||| | Sbjct 46699 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCA 46640 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||| ||| | ||| || ||||| || || || ||||||||||||||| || Sbjct 46639 CCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATGCCT 46587 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || || || ||||||||||||||| | || || ||||| Sbjct 45888 CACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTC 45829 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| | | ||||||||| || || || || ||||| || Sbjct 45828 AAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTG 45769 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | |||||||||||||| ||| | || || Sbjct 45768 GATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTT 45709 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||||||||| || |||||||| Sbjct 45708 GCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || |||||||||||||| | ||| || |||||| | || Sbjct 47021 GTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTG 46962 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||||||||||||||| || ||||| ||||| ||||||||| ||||| Sbjct 46961 CTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTT 46902 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||| | |||||| ||||| | || | |||||||| || Sbjct 46901 AGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGT 46842 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 46841 AAGGGTCTTCACGAAGATTTGCAT 46818 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||||||||| ||| || || || || |||||||||||| Sbjct 46135 TACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGG 46076 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||| || || ||||| ||| |||| || | |||||| || || | Sbjct 46075 CGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGG 46016 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || ||||| || || ||| || | |||| |||||| | |||| Sbjct 46015 GGATCCCTTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGA 45956 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||| | || || ||||| ||||| || || || ||||||||| Sbjct 45955 CCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCATG 45906 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||||||||| || || || || || |||||||||||| Sbjct 46363 TACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGG 46304 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||| || || ||||| ||| |||| || | |||||| || || | Sbjct 46303 CAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGG 46244 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || ||||| || ||| ||| || | |||| |||||| | |||| Sbjct 46243 GGATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGA 46184 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||| || || |||| ||| || || || |||||||| Sbjct 46183 CCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||||||| | || || ||||| Sbjct 46572 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTC 46513 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||||||| || |||| |||||||||||||| || || || |||||||| || Sbjct 46512 GAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 46453 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| || || | |||| ||||| | || | || || || | || | || | Sbjct 46452 GATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGAT-TCAACTTCAAGAGTAATTGTCT 46394 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||| || || ||||| |||||||| Sbjct 46393 TACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 >seq2223 Length=74567 Score = 113 bits (124), Expect = 4e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||| | ||||||||| | || ||||| ||||| |||||||||||| Sbjct 64292 CCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCT 64233 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| ||||| ||| |||||||||| ||||| || || || Sbjct 64232 AGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG- 64174 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| || || || || | |||| |||||| | ||| ||| Sbjct 64173 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACC 64114 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || || || ||||| || || |||||||| Sbjct 64113 TCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 >seq3427 Length=45480 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| |||||||||||||| || ||| | ||| || | |||||| ||| Sbjct 41855 GTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCA 41914 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | |||||| || || || || ||||| ||||| |||||| || Sbjct 41915 GCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTTT 41974 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| |||| ||||| ||||| | || | || || ||||||| || Sbjct 41975 ACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTC 42034 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 42035 TTAACAAAGATCTGCATG 42052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 |||||| | ||| | |||||||| || || |||||||||| || |||| | | | Sbjct 42067 CAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAAT--CTGCAAGTGTCCTTCCA 42124 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 |||||||| || || || ||| |||| || | ||||| || || || |||||||| ||| Sbjct 42125 TCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTG 42184 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || |||||| || || | || | || |||| ||| || ||||| | || | Sbjct 42185 TCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATG 42244 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || | || || ||||| ||||||||| Sbjct 42245 GTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCATG 42280 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| ||||| || |||||||||||||| || ||| | ||||||||| || || || Sbjct 42537 TGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCGAGTTGCTTACC 42596 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 || |||| || | |||||| || || || || || ||||| ||| || || || Sbjct 42597 GGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTAGCCTT 42656 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||| || | ||||| ||||||| || | || || || || || || Sbjct 42657 GACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCTGTAAGGGT 42716 Query 118721 TTTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 42717 CTTCACAAATATTTGCAT 42734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433771658008120