Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2770 114 1e-20 seq2223 102 9e-17 seq754 84.2 3e-11 >seq2770 Length=58540 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| ||||| || | || || | ||||| || || || Sbjct 47009 CTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAA 46950 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||| |||||| |||| | Sbjct 46949 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATT 46890 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| ||||| || | ||||||||||||||||| || ||||| Sbjct 46889 GTCAATTGTGTCAGAGCTC---TCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTT 46833 Query 43169 TACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 46832 CACGAAGATTTGCAT 46818 >seq2223 Length=74567 Score = 102 bits (112), Expect = 9e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | | |||||| || | || ||||||||| || |||||||| || Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| ||||||||||| || ||||| ||||| || |||||||| | || Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| || |||| | | | ||||| || || || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAAC 64115 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 || | || || || || || ||||| || || || ||||| |||||| ||| Sbjct 64114 CTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTGTTA 64062 >seq754 Length=178365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||||||| | || || ||| ||||||||| |||| |||||||||||||||| | Sbjct 50404 ATGAAAAATTT-CGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAA 50346 Query 60114 TACTCACCACTATACTAC 60131 |||| ||||||||||||| Sbjct 50345 TACTTACCACTATACTAC 50328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571738188830800