Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2770 102 5e-17 seq2223 84.2 1e-11 >seq2770 Length=58540 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || ||| ||||| |||||||| |||| Sbjct 46133 CCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 46074 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || |||| ||||||||| ||| Sbjct 46073 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46014 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||||| | | | | || | |||| |||||||| Sbjct 46013 ATCCCTTCTTTGTCCTGGATCTTA-GCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 45955 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| ||||| || || ||||||||||| Sbjct 45954 CTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || ||| ||||| |||||||| |||| Sbjct 46361 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCA 46302 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || | ||||||||| ||| Sbjct 46301 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGG 46242 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| |||||| ||||| | | | | || | |||| |||||||| Sbjct 46241 ATCCCTTCTTTGTCCTGGATCTTT-GCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 46183 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || | ||| || || ||||||||||| Sbjct 46182 CTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||| ||| | ||| || ||||| ||||||||||| | || || |||| Sbjct 46802 CAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTC 46743 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||||||||| || |||||||| || || |||||||| ||| | | |||||||| Sbjct 46742 CTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTC-CGGGGAATTCCTTCCTTGTC 46684 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | || | || || || | ||||| || Sbjct 46683 CTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGT 46624 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || ||||| |||||||| Sbjct 46623 CTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 >seq2223 Length=74567 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || || ||||||| ||| | ||| || || || |||||||| |||| || ||| Sbjct 64283 AGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGG 64224 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | |||||| || ||||| ||||| || |||||||| || | || ||| Sbjct 64223 CCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCC 64165 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | | || | || | || || || || | || Sbjct 64164 TTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTT 64105 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || || |||||||| ||||||||||| Sbjct 64104 ATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323028255041600