Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2223 104 2e-17 seq3427 95.1 1e-14 seq2770 91.5 1e-13 >seq2223 Length=74567 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || ||||| || || || ||| | || ||||| | || Sbjct 64067 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTCT 64126 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || |||||| Sbjct 64127 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCAT-CCACCAGACCAG 64185 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || ||| | || ||| || | |||||| ||| Sbjct 64186 CAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACAAC 64245 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||||||||| |||| || ||||| || || || Sbjct 64246 ATCCAAAAGGAGTCGACTCTTCACTTGGTGCTCAGACTTAGAGGAGG 64292 >seq3427 Length=45480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || ||||| || || || ||| | || || ||| || Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCG 42448 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| ||||||||||| | || || |||||| Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || || || || || || |||||||| | |||| | ||| ||||| || Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACT-TTAGCTGATTACAA 42329 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || ||||| |||||| |||| || | |||||||| || Sbjct 42328 CATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGG 42281 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| || || || || || | || || || || Sbjct 42052 CATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTC 41993 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| |||||| || || | || || ||||| Sbjct 41992 GGATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCA 41933 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| |||||||||||||| || |||| || ||||| || Sbjct 41932 GCAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAA 41873 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || |||||||| || || || Sbjct 41872 CATTCAGAAAGAGTCTACTCTTCACCTTGTTCT 41840 >seq2770 Length=58540 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || |||||||| ||||| | || || || || Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| |||||||||||| | || || |||||| Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 46937 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || || ||||| || | ||| | ||||| ||| Sbjct 46938 CAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAAC 46997 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || || || || || ||| Sbjct 46998 ATTCAGAAGGAGTCTACCCTCCACCTTGTTCTT 47030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445704494191200