Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1831 109 7e-19 >seq1831 Length=90912 Score = 109 bits (120), Expect = 7e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||||| ||| || | ||| |||||||| || |||||||| | ||| | || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 63723 -TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||||||| ||||| || || | |||| || |||||||| || || || | ||| || Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 |||||| ||||||||||||| | ||| ||| || ||||| | ||| || | || Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTG--TACCTTCAAGAGGTATGACCTCTCG 16330 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | |||||||| |||||||| | || ||| ||||| || || || || Sbjct 16331 AGGGTTTTAAAGCCAAAATAATCATAGTCAAAATCTCGATCATATATTAT 16380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| || ||||| | || | || || | |||| |||||| | ||| |||| ||| || Sbjct 15805 TCCCCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCGTATCATAGGAACAATGCC 15864 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| || || ||||| | || |||||||||| || || ||| Sbjct 15865 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCTGTGGCACGAATGTTGTGAACTGA 15924 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || || ||| || || ||||| || Sbjct 15925 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 15984 Query 63602 GCCTTCTATGCTATCATCGATCAT 63625 |||||| ||||||||||| |||| Sbjct 15985 GCCTTCAATGCTATCATCTTTCAT 16008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629730134080800