Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1831 116 5e-21 >seq1831 Length=90912 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||||| ||| || | ||| |||||||| || |||||||| | ||| | || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 66516 -TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||||||| ||||| || || | |||| || |||||||| || || || | ||| || Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| ||||||||||||| || ||| | || ||||| | ||| || | || | Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTGTACCTTCAAGAGGTATGACCTCTCGAG 16332 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||| |||||||| | || ||| ||||| || || || || Sbjct 16333 GGTTTTAAAGCCAAAATAATCATAGTCAAAATCTCGATCATATATTAT 16380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658081396252400