Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3427 104 2e-17 seq2770 91.5 1e-13 seq2223 86.0 6e-12 >seq3427 Length=45480 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| | ||||| ||||||||||| |||||||| ||||| Sbjct 41824 GCCGCCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGC 41883 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||||| | ||||||||||||| | |||| | ||||| || || || Sbjct 41884 CAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 41943 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| |||| | |||| | || | || || | ||||| Sbjct 41944 GATACCCTCTTTGTC-CTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCA 42002 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| |||||||| || || || || || ||||| Sbjct 42003 CCTCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCG 139607 ||||| || || |||| || ||||| ||||| ||||| ||||| ||| | || || Sbjct 42292 ACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAA-GTCCTGC 42350 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 ||||| | || ||||| ||| |||| || | |||||| || || || || ||||| | Sbjct 42351 CATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCT 42410 Query 139668 TGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 |||| ||| |||| | |||| | || | ||| || | | || ||||||| ||| Sbjct 42411 TGTCT-TGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAA-GGTA 42468 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| || || | || || || |||||||||||| Sbjct 42469 ATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATA 42507 >seq2770 Length=58540 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || ||||| | || ||||| || |||||||| || || | |||| Sbjct 46807 AAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGA 46748 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || | ||| || ||||| | |||||||||||||| || || || || ||||| Sbjct 46747 CCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCC 46689 Query 139667 TTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | ||| | | || | |||||| | | ||||||||| | ||| Sbjct 46688 TTGTC-CTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGT 46630 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||| ||||| | || || || || || ||||| Sbjct 46629 GATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || || || || |||||||| |||||| | || | ||| || Sbjct 45887 ACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCGTCCTCA 45828 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||||| | |||||||| || || || ||||| || || | Sbjct 45827 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCCTGG 45768 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | | ||| ||||| | ||| | |||||| Sbjct 45767 ATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTG 45708 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||||||||||| || |||||| Sbjct 45707 CCGGTTAGAGTTTTTACGAAGATCTGCATA 45678 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || ||||| |||||| | || | ||| || Sbjct 46343 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCA 46284 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || || || || ||||||| | ||||| || || || || ||||||||||| | Sbjct 46283 AGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGG 46224 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| ||| | | || | ||||||| | || ||||| | ||| | |||||| Sbjct 46223 ATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTT 46164 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || || ||||| || |||||| Sbjct 46163 CCAGTCAAAGTCTTAACGAAGATCTGCATA 46134 >seq2223 Length=74567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| ||||| ||||| |||||| | || | ||| || Sbjct 64274 ACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCT 64215 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||| ||||||||||| || || || |||||||| ||||| | Sbjct 64214 AGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTGG 64156 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | | ||| ||||| | ||| | ||||| Sbjct 64155 ATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTTC 64096 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 64095 CCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495995109112000