Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1831 125 1e-23 >seq1831 Length=90912 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||||| ||| || | ||| |||||||| || |||||||| | ||||| || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 80395 -TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||| ||||| ||||| | |||| || |||||||| || || || | ||| || Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| ||||||||||||| || ||| | || ||||| | ||| || | || | Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTGTACCTTCAAGAGGTATGACCTCTCGAG 16332 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||| |||||||| | || ||| ||||| || || || || Sbjct 16333 GGTTTTAAAGCCAAAATAATCATAGTCAAAATCTCGATCATATATTAT 16380 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | || || | |||| |||||| | ||| |||| ||| || Sbjct 15805 TCCCCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCGTATCATAGGAACAATGCC 15864 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| ||||| ||||| || || |||||||||| || || ||| Sbjct 15865 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCTGTGGCACGAATGTTGTGAACTGA 15924 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || ||| || |||||||| || Sbjct 15925 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 15984 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 ||| || ||||||||||| |||| Sbjct 15985 GCCTTCAATGCTATCATCTTTCAT 16008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718169050420400