Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2770 107 1e-18 >seq2770 Length=58540 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || |||| ||||||||| | ||| ||||| || | |||||||||| Sbjct 45906 GCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGC 45847 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| |||| || | || || |||||||| ||||| | ||| ||||| | || Sbjct 45846 GAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGG 45787 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| | ||||| || | | ||||| ||| ||||| Sbjct 45786 AATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAG-AGCTCTCGA 45728 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 | || | || || || || |||||||||||||| || || || ||||| ||| Sbjct 45727 CCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATTC 45675 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | |||||| |||| ||| ||||| || | |||||||||| Sbjct 46133 CCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 46074 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | ||| || ||||| || |||| | ||| || || | || Sbjct 46073 AGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46014 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| || | | |||||| || ||||| Sbjct 46013 ATCCCTTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 45954 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||||||||| || || || || ||||| Sbjct 45953 TCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381317961364380