Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3427 95.1 1e-14 seq2770 93.3 4e-14 >seq3427 Length=45480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCG 143027 ||||| || ||||||| || || || ||||| ||||||||||| ||| | || || Sbjct 42292 ACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT-AAAGTCCTGC 42350 Query 143028 AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| | ||| ||||| ||| |||| || | |||||| || || || || ||||| | Sbjct 42351 CATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCT 42410 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| |||||| |||| | || | || |||| | |||||| |||| || | Sbjct 42411 TGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAA-GGTAA 42469 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || || | || || || |||||||||||| Sbjct 42470 TGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATA 42507 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || | |||| ||||| || || || ||||||||||| | ||| || Sbjct 42064 ACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCC 42123 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || |||||||| ||||| || |||| || | |||||| || || || ||||| ||||| Sbjct 42124 ATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTT 42183 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| |||| | || | || |||| | |||||| || | ||| | Sbjct 42184 GTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGAT 42243 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || || || || || || || ||||| Sbjct 42244 GGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | |||| ||||| ||||| || ||||||||||| Sbjct 41824 GCCGCCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGC 41883 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| | |||||||||||| | |||| | ||||| || || || Sbjct 41884 CAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 41943 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| |||||| |||| | || | || |||| || || Sbjct 41944 GATACCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCAC 42003 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| |||||||| || || || || || ||||| Sbjct 42004 CTCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 >seq2770 Length=58540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || || || | || || || || || |||||||||||| Sbjct 46590 GCCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGC 46531 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||| ||||||||||| || ||| |||| ||||| |||||||| || || Sbjct 46530 AAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGG 46471 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||||| || | | || | |||||| | | ||| || Sbjct 46470 AATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAAC 46411 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | ||||| || ||||| || || || || || |||||| Sbjct 46410 TTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCATA 46362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506943988375200