Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3427 89.7 4e-13 >seq3427 Length=45480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| || ||||| |||||||| |||| || | | || |||| ||||||||| Sbjct 41855 GTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCA 41914 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | |||||||| || || | ||||||||||| ||||||| ||| Sbjct 41915 GCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTTT 41974 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | |||| || | || ||||| || || || || || Sbjct 41975 ACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTC 42034 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 42035 TTAACAAAGATCTGCAT 42051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | ||||||||||| || || |||||||| || | ||| | | ||| Sbjct 42068 AACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCC 42127 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || || ||||| || | |||||||| ||||| || || | |||||||||||| Sbjct 42128 TCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCC 42187 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 ||||||| ||||| | | | | ||||| | || || || | || ||||| Sbjct 42188 TGAATTTTCGCCTTTACATTGTCTATTGTATC-CGAGCTTTCTACCTCCAAAGTGATGGT 42246 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || || ||||| || ||||| Sbjct 42247 CTTTCCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | ||| | | ||| | ||| | || |||||||| |||||||||||||| | Sbjct 42734 TTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAG 42793 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || |||| || || || ||| |||| | ||||| ||||| || Sbjct 42794 CCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGATCTGGGG 42853 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| || || || || | | | | ||||| | |||| Sbjct 42854 GAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGAACTCTCCA 42913 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 || | || ||||| ||||| ||||| ||||| ||||| |||||||| | |||| Sbjct 42914 CCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCATCTAAAAT 42969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414516665547340