Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2770 87.8 1e-12 >seq2770 Length=58540 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || || |||| |||||| |||| |||||||| || || || ||||| |||| Sbjct 46817 ACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGC 46758 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | ||| ||||| ||||||||| || || | |||||||||||||| ||| Sbjct 46757 AAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCG-GGG 46699 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| ||| || || | | || ||||| | | Sbjct 46698 AATTCCTTCCTTGTCCTGAATCTTGGCC---TTAACGTTGTCGATTGTGTCTGAGCTCTC 46642 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || ||||| || || || || || || || ||||| |||||| Sbjct 46641 CACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATG 46590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318734436516780