Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3427 87.8 2e-12 >seq3427 Length=45480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||||||||| ||| ||| || ||||||||| ||| Sbjct 41849 TGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGT 41908 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | |||||| || || || | || |||||||| |||||| Sbjct 41909 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTC 41968 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | ||| | ||| |||| || ||||| || |||||| Sbjct 41969 GCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTC 42028 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || || ||||| || ||||| Sbjct 42029 AAGGTCTTAACAAAGATCTGCAT 42051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||||||| || || || || ||||| ||||||||||| | | ||| | ||| Sbjct 42295 CAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATC 42354 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||| || || ||| | ||||| || || || || || | ||||| ||||| Sbjct 42355 TTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 42414 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| || || | | ||| | ||| | || || | || ||||||||| Sbjct 42415 TTGAATTTTCGCCTTTACATTGTCAATTGTATC-CGAGCTTTCTACCTCAAGGTAATGGT 42473 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || | || || ||||| |||||||| Sbjct 42474 CTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419530386581910