Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3427 141 2e-28 seq2770 132 1e-25 seq6102 93.3 1e-13 seq753 89.7 1e-12 >seq3427 Length=45480 Score = 141 bits (156), Expect = 2e-28 Identities = 174/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| ||||| || || | | || || || || | || || || ||||||||||| Sbjct 42726 TATTTGCATTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATT 42785 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || |||| | ||| || || ||||| | ||| || ||||||||||| | ||||||||| Sbjct 42786 GTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTG 42845 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| || || || || || || || || ||||| || || ||||| |||| |||||| Sbjct 42846 ATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCTATGGTATCAGA 42905 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || || ||||||||||| | ||||| ||||| || ||||| Sbjct 42906 ACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || || |||| | ||| ||||| ||||| | ||||| ||| Sbjct 41855 GTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCA 41914 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | |||||| || || || || || || ||||| |||||||| || || ||| Sbjct 41915 GCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTTCGCCTTT 41974 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| |||| |||||| | || ||||| | || || ||||| || || | || Sbjct 41975 ACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTC 42034 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 42035 TTAACAAAGATCTGCAT 42051 >seq2770 Length=58540 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | || ||||| ||||| || || || || | ||||| | Sbjct 46352 AGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGT 46293 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| ||||| || || || || ||||| || || || || || |||||| Sbjct 46292 CCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCT 46233 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||||||||| || || || | ||| ||| || ||| ||||| || || Sbjct 46232 TTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTG 46173 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| | || || || || |||||||| Sbjct 46172 ATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || | || || | ||||| || ||||||||||| Sbjct 46559 GTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTTCCG 46500 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||| | ||| ||||| || || ||||| || |||||||| || || || || Sbjct 46499 GCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGATTTTGGCCTTG 46440 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | ||| || || || ||||| ||||||||||| | || Sbjct 46439 ACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTACCAGTCAAGGTC 46380 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 46379 TTAACAAAGATCTGCAT 46363 Score = 107 bits (118), Expect = 4e-18 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||||| || || | |||||| || | || |||||| Sbjct 46786 GTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCAACTGCTTTCCA 46727 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || || || || |||||||| || ||||||||||| || || Sbjct 46726 GCGAAAATCAGACGTTGCTGGTCCGG-GGAATTCCTTCCTTGTCCTGAATCTTGGCCTTA 46668 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| || || || ||||| || || || || Sbjct 46667 ACGTTGTCGATTGTGTC-TGAGCTCTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGT 46609 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 46608 CTTGACAAAAATCTGCAT 46591 >seq6102 Length=18543 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||| || || ||||| || | ||||||||||| || ||||| Sbjct 17131 CCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTATCGCTAGACTCGACCTCA 17072 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || ||||| || || |||||||| Sbjct 17071 AGGGTGATGGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 17028 >seq753 Length=178373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||| || || ||||| || | ||| ||||||| || ||||| Sbjct 81307 CCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCGCTAGACTCGACCTCA 81248 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| ||||| || ||||| || || |||||||| || Sbjct 81247 AGGGTGATGGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCATCTT 81201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151234502035880