Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2770 111 1e-19 seq2223 96.9 3e-15 seq3427 95.1 1e-14 >seq2770 Length=58540 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||||| ||| |||||||| ||| ||||| |||||||||||||| || Sbjct 45905 CCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCG 45846 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||| |||||||| ||| | | || || | |||||||||| || Sbjct 45845 AGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 45786 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | || |||||| ||| || || ||||| | | || ||||| || | ||| Sbjct 45785 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCAGAGCTCTCGA 45728 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| |||||||| || || |||||||| Sbjct 45727 CCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| || || || || |||||| ||||||||||| |||| Sbjct 46817 ACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAG- 46759 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || ||||||||| |||||| || || |||| | ||| ||||| ||| | Sbjct 46758 CAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCC-GGG 46700 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | |||||||||| ||| || ||| | | | || || || || | ||| Sbjct 46699 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCG--ATTGTGTCTGAGCTCTC 46642 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || || |||||||| || || |||||||||||||| Sbjct 46641 CACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 >seq2223 Length=74567 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||||||| ||||||||||| || | ||| ||||||| Sbjct 64275 CACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 64216 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||| ||||| || || | | |||||||||| Sbjct 64215 TAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTG 64157 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | ||||| || | |||||| ||| | ||||| || || Sbjct 64156 GATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTT 64097 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 || || || |||||||| || |||||||| || Sbjct 64096 CCCTGTTAGGGTTTTCACGAAGATCTGCATTGT 64064 >seq3427 Length=45480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| || ||| || |||||||||||||||||||| ||| || | || |||| || Sbjct 41849 TGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAA-AGTC-CTACCATCTTCCAACT 41906 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | ||||| | |||| || | |||||| || || | || || |||||| ||||| Sbjct 41907 GTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTT 41966 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | |||||||||| | | |||| ||| | |||||||| || |||| Sbjct 41967 TCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGG 42026 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || ||||| |||||||| Sbjct 42027 TCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCT 48575 ||| | |||||||||| |||||| |||||||||||||||||||| ||| | | |||| Sbjct 42525 CACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCTTCCATCCT 42583 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||||||| | | || | | |||||| || || | || |||||| || Sbjct 42584 CGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCTT 42643 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | |||||||| | | ||| ||||| || ||||| | Sbjct 42644 GGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTCT 42703 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || ||||| Sbjct 42704 TTCCTGTAAGGGTCTTCACAAATATTTGCAT 42734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421194161271110