Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2742 116 2e-21 seq2762 109 3e-19 seq1697 109 3e-19 seq1346 109 3e-19 seq1146 105 3e-18 seq3302 104 1e-17 seq2558 102 4e-17 seq2437 100 1e-16 >seq2742 Length=59147 Score = 116 bits (128), Expect = 2e-21 Identities = 86/101 (85%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || || | || | ||||||| | ||||||||||||| | | |||||||| ||||||||| Sbjct 46201 AATTACAAAAGTTATAAAAATTTAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 46260 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 46261 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 46301 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 46361 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 46420 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 46421 CAGCTGAGCTAATAGGCC 46438 >seq2762 Length=58715 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| | ||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 58115 AATAGATAATGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 58056 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 58055 GACGCTCTAACCAGCTGAGCTAATAGGCC 58027 >seq1697 Length=96853 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | ||| ||||||| ||| ||||| ||| | | |||||||| ||||||||| Sbjct 52464 AAATACAAAAT--ATAAAAATATAAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCG 52407 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 52406 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 52366 >seq1346 Length=117153 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 102358 AAACAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 102417 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 102418 GCTCTAACCAGCTGAGCTAATAGGCCG 102444 >seq1146 Length=134805 Score = 105 bits (116), Expect = 3e-18 Identities = 83/98 (85%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 11434 TAGAATTAA--TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 || |||||| || |||| ||| ||||||||| | | |||||||| |||||||||||| Sbjct 75772 TAAAATTAACTTAGAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGT 75715 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||| |||||||||| |||| Sbjct 75714 TATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 75677 >seq3302 Length=47315 Score = 104 bits (114), Expect = 1e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||| || | || ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 18460 AAAAAAAGATAATAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 18401 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| |||| |||||||||| ||||| Sbjct 18400 CGACGCTCTAACCAGCTGAGCTAATAGGCCG 18370 Score = 102 bits (112), Expect = 4e-17 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||| || || || ||||| ||| | | |||||||| |||||||||||||||||||| Sbjct 18772 AAAAAATAAGCAGAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 18713 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 18712 CGACGCTCTAACCAACTGAGCTAATAGGCC 18683 >seq2558 Length=64097 Score = 102 bits (112), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 61584 AAAAATTAT-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 61526 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 61525 CTCTAACCAGCTGAGCTAATAGGCC 61501 >seq2437 Length=67572 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||| ||| | | |||||||| |||||||||||||||||||||||| Sbjct 56661 AAAAAAT--ATGTGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 56604 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 56603 GCTCTAACCAACTGAGCTAATAGGCC 56578 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261455793274360