Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2770 129 5e-25 seq3427 127 2e-24 seq2223 120 3e-22 >seq2770 Length=58540 Score = 129 bits (142), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855 |||||| || | || |||||||| || | ||| |||||| | || || | ||| Sbjct 45888 CACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCCG--TCC 45831 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || ||| ||||||| || || |||||||| || ||||||||||| || || Sbjct 45830 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTCCTTATCC 45771 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| | ||| ||||||| | ||||| || | |||||||| Sbjct 45770 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTC 45711 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| || ||||||||||| Sbjct 45710 TTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || ||||| || | ||| |||||| | || | ||||| Sbjct 46572 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTC 46513 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||||||| ||||||||| | ||||||||||| ||||| || || || || | Sbjct 46512 GAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 46453 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||||||| | ||| ||||||| || || |||| || || || || Sbjct 46452 GATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTT 46393 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || |||||||||||||| Sbjct 46392 ACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855 ||||||||| | || |||||||| || | ||| |||||| | ||| || | ||| Sbjct 46344 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCG--TCC 46287 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || |||||| | ||||| | ||| ||||| || || || || ||||||||||| Sbjct 46286 TCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCC 46227 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || ||||| |||||| | ||| ||||| | ||||| || | ||||| || Sbjct 46226 TGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTC 46167 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| | ||| || || ||||||||||| Sbjct 46166 TTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855 ||||||||| | || |||||||| || | ||| |||||| | ||| || | ||| Sbjct 46116 CACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGTCCG--TCC 46059 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || || |||||| | ||||| | || ||||| ||||| || || ||||||||||| Sbjct 46058 TCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCC 45999 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || || |||||| | ||| ||||| | ||||| || | ||||| || Sbjct 45998 TGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTC 45939 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| || || ||||||||||||| Sbjct 45938 TTCCCGGTTAGAGTCTTAACGAAGATCTGCATGC 45905 Score = 107 bits (118), Expect = 2e-18 Identities = 170/239 (71%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || ||||| |||| ||||||||||| ||| || ||||| || | ||| | Sbjct 46824 TTTGCATACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGT 46765 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || || || || || ||||||| ||| ||||| | || || | | |||||| Sbjct 46764 AGTC-AGCA-AGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTG 46707 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || || ||||| ||||| ||||| | ||| || ||||| ||| | ||| ||||| | Sbjct 46706 GTCCGG-GGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGA 46648 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | ||||| || || || || || || || ||||| |||||||||| Sbjct 46647 GCTCTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATGC 46589 Score = 102 bits (112), Expect = 7e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| ||||| || | ||| ||||| || || || || |||||||| || || | Sbjct 47014 GTAGACTCCTTCTGAATGTTGTAATCAG-CA-AGAGTACGACCATCCTCCAATTGCTTCC 46957 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | | ||||| |||||||| || ||||| ||||| | ||||| |||| Sbjct 46956 CCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCCT 46897 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | | ||||||| | || || || | ||||||||||| || ||||| | Sbjct 46896 TGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGG 46837 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| ||||| ||||| Sbjct 46836 TCTTCACGAAGATTTGCAT 46818 >seq3427 Length=45480 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||||||| | ||| | |||||| ||||| || | ||| ||||| | Sbjct 42053 CCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTG-C 42111 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| | |||||| || || || ||| | ||||| | ||||||||| ||||| | Sbjct 42112 A-AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTG 42170 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || |||||||| | |||||| ||||| || | | | || || | | || | Sbjct 42171 GGATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTA 42230 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| |||||||| | || ||||||||||||||||||| Sbjct 42231 CCTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCATGC 42281 Score = 102 bits (112), Expect = 7e-17 Identities = 175/253 (69%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 94756 TAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG 94814 ||| ||| || |||| ||| || ||| || ||||| |||| ||| | ||| | || | Sbjct 42710 TAAGGGTCTTCACAAATATTTGCATTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTG 42769 Query 94815 ATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 | ||||| || | || ||||| || ||| | ||| |||| || || || ||| Sbjct 42770 ACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAA 42829 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | || || || || |||||||| ||||| || || ||||| | || || ||||| || Sbjct 42830 AAATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACAT 42889 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | | || |||| || || |||| |||||||| || ||||| | ||||||| Sbjct 42890 TGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCA 42949 Query 94995 CAAAGATCTGCAT 95007 ||||||| ||||| Sbjct 42950 CAAAGATTTGCAT 42962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | |||||| || || || | ||| ||||| || ||| | ||| |||| ||| Sbjct 41848 GTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTG 41907 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||| || |||| || || || ||||| ||||| || ||||| |||||||| | |||||| Sbjct 41908 TTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATTTT 41967 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| || | | | || || | || || || | || ||||| ||||| || Sbjct 41968 CGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCTTTCCGGT 42027 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 | || || |||||||||||||||| Sbjct 42028 CAAGGTCTTAACAAAGATCTGCATGC 42053 >seq2223 Length=74567 Score = 120 bits (132), Expect = 3e-22 Identities = 167/231 (72%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| | || | ||||||||| | ||| || |||||||| | ||| |||||| Sbjct 64294 CTCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGG 64235 Query 94839 TCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 ||| ||| | ||||| ||||| |||||| | ||||| | | |||||| ||||| Sbjct 64234 C--TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGG 64177 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| | ||||| ||||| | || || |||||||| | ||| ||||||| || Sbjct 64176 TGGA-TGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTC 64118 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || || || || || |||||||| ||||||||||| Sbjct 64117 AACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228943559600