Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1831 116 5e-21 >seq1831 Length=90912 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||||| ||| || | ||| |||||||| || |||||||| | ||| | || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 63672 -TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||||||| ||||| || || | |||| || |||||||| || || || | ||| || Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| ||||||||||||| || ||| | || ||||| | ||| || | || | Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTGTACCTTCAAGAGGTATGACCTCTCGAG 16332 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||| |||||||| | || ||| ||||| || || || || Sbjct 16333 GGTTTTAAAGCCAAAATAATCATAGTCAAAATCTCGATCATATATTAT 16380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | || || | |||| |||||| | ||| |||| ||| || Sbjct 15805 TCCCCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCGTATCATAGGAACAATGCC 15864 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| | ||||| || || ||||| || || |||||||||| || || ||| Sbjct 15865 ATTTGATGTTCCATTTGTCCCACGAATATAACTCCCTGTGGCACGAATGTTGTGAACTGA 15924 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || || ||| || || ||||| || Sbjct 15925 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 15984 Query 63551 ACCCTCTATGCTATCATCGATCAT 63574 || || ||||||||||| |||| Sbjct 15985 GCCTTCAATGCTATCATCTTTCAT 16008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622860688207600