Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2770 123 2e-23 seq3427 120 3e-22 >seq2770 Length=58540 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| |||| || || || || Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| ||| ||| |||||||||||||| || || || Sbjct 46195 GACACCATCGACAACGTCA---AAGC-AAAGATCCAGGACAAAGAAGGGATCCCCCCGGA 46250 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || || ||||| || ||| | || || | || ||| | | |||||| Sbjct 46251 CCAGCAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTA 46310 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || || |||||||| || || || ||||| ||||| Sbjct 46311 CAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTCAGGCT 46352 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || | ||||| |||| || || || || Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | || |||||||||||||| || || || Sbjct 45967 GACACCATCGACAACGTCA---AAGCTAAGATCCAG-GACAAAGAAGGGATCCCCCCAGA 46022 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || ||||| || ||| | || || | || ||| | | |||||| Sbjct 46023 CCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTA 46082 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || || |||||||| || || || ||||| ||||| Sbjct 46083 CAACATCCAGAAGGAATCCACACTCCACTTGGTGCTCAGGCT 46124 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||| | ||||| || ||||||| |||| || ||| ||| Sbjct 45679 ATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 45738 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || ||||| ||||| || || || Sbjct 45739 GACACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGATCAG 45798 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | || || | || || | | ||||||||| Sbjct 45799 CAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTACAAC 45858 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || |||||||| || ||||| ||||||||||| Sbjct 45859 ATTCAGAAGGAATCCACCCTTCATTTGGTGCTAAGGCT 45896 >seq3427 Length=45480 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || ||||| ||||||| | || |||||| ||| Sbjct 42962 ATGCAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCT 42903 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| || ||| ||||| || |||||||| || || | Sbjct 42902 GATACCATAGA--CAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATC 42845 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | |||||||| || || ||||| ||||||| | ||| ||| ||||||| Sbjct 42844 AACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACA 42785 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || || || || || || | ||||| Sbjct 42784 ATATTCAGAAGGAGTCAACCCTTCACCTCGTGCT 42751 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| | || || || ||||||| |||| || ||| || Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || || || || || ||| || ||| || || ||||| || ||||| ||| Sbjct 42675 TGATACCATTGA--CAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGAC 42618 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | |||| |||||||| || ||| | || |||| | ||| ||| |||||| Sbjct 42617 CAGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTAC 42558 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || ||| | ||||| Sbjct 42557 AACATTCAGAAGGAGTCCACACTTCATCTCGTGCT 42523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || |||| || | || || || || Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTAC-CTTGAGGTAGAAAGCTCG 42448 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || |||| ||| ||||| ||||| || ||||| ||| Sbjct 42447 GATACAATTGA--CAATGTAAAGGCGAAAATTCA-AGACAAGGAAGGAATCCCACCAGAC 42391 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | |||| |||||||| || ||||| ||||||| | ||| | | |||||| Sbjct 42390 CAGCAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTAC 42331 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || ||||| ||||| Sbjct 42330 AACATCCAAAAGGAGTCGACCCTTCATTTGGTGCT 42296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433269326034650