Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5294 93.3 5e-14 seq753 91.5 2e-13 seq1618 89.7 6e-13 seq1078 89.7 6e-13 seq1568 87.8 2e-12 seq7879 84.2 2e-11 seq607 84.2 2e-11 seq680 82.4 8e-11 >seq5294 Length=23726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 5427 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 5484 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || |||||| ||| ||| ||||| || || |||||| Sbjct 5485 GTGGGTTCAAATCCCACAGCTGTCAATTTATT-TTAAGATATTTGTT 5530 >seq753 Length=178373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 88469 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 88412 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || |||||| ||| ||| ||||| Sbjct 88411 GTGGGTTCAAATCCCACAGCTGTCAACTTATT 88380 >seq1618 Length=100917 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 93309 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 93250 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 93249 GTGGGTTCAAATCCCACTTCTGACAA 93224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/95 (81%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || || Sbjct 93504 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGACGGC 93445 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| | ||||| || Sbjct 93444 GTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTT 93411 >seq1078 Length=140634 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 138036 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 137977 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| || ||||| |||||| || Sbjct 137976 GTGGGTTCAAATCCCACTTCTGACATAT 137949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 138232 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 138173 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 138172 GTGGGTTCAAATCCCACTTCTGACA 138148 >seq1568 Length=103473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 28664 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 28605 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 28604 GTGGGTTCAAATCCCACTTCTGACA 28580 >seq7879 Length=11116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1604 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1661 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 1662 GGGTTCAAATCCCACAGCTGTCAAA 1686 >seq607 Length=204775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 7/108 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2622 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 2679 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||||||| || ||||| |||||| ||| || | | ||||||| Sbjct 2680 GCGTGGGTTCAAATCCCACTTCTGACATTTTA-TAGAGCATTTTTTGT 2726 >seq680 Length=191764 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 165729 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 165672 Query 126328 TTCGAACCCCACACCTGACAAATTATTAT 126356 ||| || |||||| ||| || || |||| Sbjct 165671 TTCAAATCCCACAGCTGTCATTTTGTTAT 165643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556783465956400